Cool, here's what you need to know! The human microbiome is the entire community of microorganisms that live on or in your body and is made up of bacteria, fungi and viruses. Your body contains, or has on it, many different microbiomes. This is because each crack, crevice, surface, and orifice creates a distinct environmental niche that promotes the growth of totally different microorganisms! Meaning, your skin, your mouth, your armpits, and your gut have different microbiomes.