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Benjamin Strope

As seen in: BioRxiv, Texas Medical Center
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Articles by Benjamin Strope

A Pipeline for Processing and Sorting Xenograft Reads From S" by Benjamin S Strope, Katherine E Pendleton et al.

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By Benjamin Strope, Katherine E. Pendleton, William Bowie, Gloria V. Echeverria
| Texas Medical Center
SUMMARY: Xenograft models are attractive models that mimic human tumor biology and permit one to perturb the tumor microenvironment and study its drug response. Spatially resolved transcriptomics (SRT) provides a powerful way to study the organization of xenograft models, but currently there is a lack of specialized pipeline for processing xenograft reads originated from SRT experiments. Xenomake is a standalone pipeline for the automated handling of spatial xenograft reads.
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Temporal Dynamics of Genetically Heterogeneous Extended-Spectrum Cephalosporin-Resistant Escherichia coli Bloodstream Infections

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By William C. Shropshire, Benjamin Strope, Selvalakshmi Selvaraj Anand, Jordan Bremer
| Texas Medical Center
Extended-spectrum cephalosporin-resistant Escherichia coli (ESC-R-Ec) is an urgent public health threat with sequence type clonal complex 131 (STc131), phylogroup B2 strains being particularly concerning as the dominant cause of ESC-R-Ec infections.
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Xenomake: a pipeline for processing and sorting xenograft reads from spatial transcriptomic experiments

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By Benjamin Strope, Katherine E. Pendleton, William Bowie, Gloria V. Echeverria
| BioRxiv
Abstract Xenograft models are attractive models that mimic human tumor biology and permit one to perturb the tumor microenvironment and study its drug response. Spatially resolved transcriptomics (SRT) provide a powerful way to study the organization of xenograft models, but currently there is a lack of specialized pipeline for processing xenograft reads originated from SRT experiments. Xenomake is a standalone pipeline for the automated handling of spatial xenograft reads.
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Temporal Dynamics of Genetically Heterogeneous Extended-Spectrum Cephalosporin Resistant Escherichia coli Bloodstream Infections

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By William C. Shropshire, Benjamin Strope, Selvalakshmi Selvaraj Anand, Jordan Bremer
| BioRxiv
Thank you for your interest in spreading the word about bioRxiv. NOTE: Your email address is requested solely to identify you as the sender of this article. Your Email * Your Name * Send To * Enter multiple addresses on separate lines or separate them with commas. Message Subject (Your Name) has forwarded a page to you from bioRxiv Message Body (Your Name) thought you would like to see this page from the bioRxiv website.
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Dynamic Periodicity of Extended-Spectrum Cephalosporin Resistant Bloodstream Escherichia coli Infections Driven by Non-CC131 Strains

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By William C. Shropshire, Jordan Bremer, Benjamin Strope, Selvalakshmi Selvaraj Anand
| BioRxiv
Thank you for your interest in spreading the word about bioRxiv. NOTE: Your email address is requested solely to identify you as the sender of this article. Your Email * Your Name * Send To * Enter multiple addresses on separate lines or separate them with commas. Message Subject (Your Name) has forwarded a page to you from bioRxiv Message Body (Your Name) thought you would like to see this page from the bioRxiv website.
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