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PubMed is a widely used search engine for biomedical literature. It is developed and maintained by the US National Library of Medicine/National Center for Biotechnology Information and is visited daily by millions of users around the world.
The computational pipeline to assemble the iX knowledgebase was executed on a high-performance computing cluster, by running a batch job scheduling system with up to 150 simultaneous jobs allowed. Details of the specific pipeline steps appear below. It typically took ∼2 weeks to generate the iX database from start to finish for the entire corpus.
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