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K. Eric

As seen in: Nature, Biomed Central (BMC)
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Articles by K. Eric

Improvements in viral gene annotation using large language models and soft alignments - BMC Bioinformatics

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By K. Eric
| Biomed Central (BMC)
The soft alignments of the 10,000 dissimilar UniProtKB sequence pairs resulted in an average of 1.9 mutual or secondary matches per pair using the criteria of an alignment score of \(\ge 20\) and a minimum of \(k=3\) consecutive matches, i.e., a gap-free alignment of size 3. The probability of detecting a correspondence between proteins assumed to be non-homologous (less than 6% global similarity) was \(\approx\) 1.1e\(-\)5 for an average amino acid length of 392 in the dataset.
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Towards an integrative view of virus phenotypes - Nature Reviews Microbiology

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By van Etten, Roger Williams, K. Eric
| Nature Verified
References 1. Suttle, C. A. Marine viruses — major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801–812 (2007). CAS PubMed Article PubMed Central Google Scholar 2. Rohwer, F. & Thurber, R. V. Viruses manipulate the marine environment. Nature 459, 207–212 (2009). CAS PubMed Article PubMed Central Google Scholar 3. Simmonds, P. et al. Virus taxonomy in the age of metagenomics. Nat. Rev. Microbiol. 15, 161–168 (2017). CAS PubMed Article PubMed Central Google Scholar 4. Fuhrman, J. A.
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