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Luuk Romeijn

As seen in: Wiley Online Library, BioRxiv
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Articles by Luuk Romeijn

LncRNA-BERT: An RNA Language Model for classifying Coding and Long Non-Coding RNA

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By Hailiang Mei, Luuk Romeijn, Davy Cats
| BioRxiv
Abstract Understanding (novel) RNA transcripts generated in Next Generation Sequencing experiments requires accurate classification, given the increasing evidence that long non-coding RNAs (lncRNAs) play crucial regulatory roles. Recent developments in Large Language Models present opportunities for classifying RNA coding potential with sequence-based algorithms that can overcome the limitations of classical approaches, which assess coding potential based on a set of predefined features.
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MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences

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By Luuk Romeijn, Andrius Bernatavicius, duong vu
| Wiley Online Library Verified
1 INTRODUCTION Fungi play a crucial role in Earth's ecosystems due to their function and prevalence. As decomposers, they break down organic matter, thereby providing nutrients to their surroundings and controlling the structure of the soil. Recent studies on species richness have estimated the number of existing fungal species to be somewhere between 2 to 6 million (Baldrian et al., 2021; Hawksworth & Lücking, 2017; Niskanen et al., 2023). Hence, fungi comprise one of the largest kingdoms of life.
Open in Who Shared Issue with article?

MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences

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By duong vu, Luuk Romeijn, Andrius Bernatavicius
| Wiley Online Library Verified
1 INTRODUCTION Fungi play a crucial role in Earth's ecosystems due to their function and prevalence. As decomposers, they break down organic matter, thereby providing nutrients to their surroundings and controlling the structure of the soil. Recent studies on species richness have estimated the number of existing fungal species to be somewhere between 2 to 6 million (Baldrian et al., 2021; Hawksworth & Lücking, 2017; Niskanen et al., 2023). Hence, fungi comprise one of the largest kingdoms of life.
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