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Articles by Omar Alkousa
Ensemble Averaging in Medical Signal Processing
Simple yet so powerful method Dealing with data as a researcher, a data scientist/analyst, or even in any science field is inevitable. Thus, the reliability of the data you’re working with is crucial as it decides the reliability of your work. In this post, we will introduce the ensemble averaging method, a simple but powerful method, and its applications on signal data. The average is a single value that can describe a set of values.
Ensemble Averaging in Medical Signal Processing
First, we will import the required Python packages: Numpy: for array manipulation and arithmetic calculation. Matplotlib: to visualize the signal data of the VER response. Scipy: we will use the module scipy.io to read the data file (.MAT file type). # Import the required packages import matplotlib.pyplot as plt import numpy as np from scipy import io Now, we read the data file that contains the electrical signals using the scipy.io.loadmat method. The output is a dictionary of the file content.
Fourier Transform, the Practical Python Implementation
We will start simply to understand the inputs and outputs of each method we use in this post. First, we will import the required packages. Numpy is for dealing with matrices and calculations. We import the methods that help us with the calculations related to Fourier Analysis from scipy.fft module (fft, rfft, fftfreq, rfftfreq). Finally, Plotly and matplotlib are for visualization.
Fourier Transform, the Practical Python Implementation
Fourier Transform is one of the most famous tools in signal processing and analysis of time series. The Fast Fourier Transform (FFT) is the practical implementation of the Fourier Transform on Digital Signals. FFT is considered one of the top 10 algorithms with the greatest impact on science and engineering in the 20th century [1].
Learn Discrete Fourier Transform (DFT)
Mathematical and Coding Perspective Digital signal processing (DSP) is the computation of mathematical methods used to manipulate signal data [1]. One of the most important tools in digital signal processing is the Discrete Fourier Transform (DFT). It is usually used to produce a signal’s frequency-domain (spectral) representation [2]. In this post, we will discuss how DFT works and how to implement it to output the spectrum of the signals.
Learn Discrete Fourier Transform (DFT)
Mathematical and Coding Perspective Digital signal processing (DSP) is the computation of mathematical methods used to manipulate signal data [1]. One of the most important tools in digital signal processing is the Discrete Fourier Transform (DFT). It is usually used to produce a signal’s frequency-domain (spectral) representation [2]. In this post, we will discuss how DFT works and how to implement it to output the spectrum of the signals.
Use Classes for Generating Signals
Classes == More Code Readability During your work with signal data, you might end up programming multiple functions and methods that can implement the process you want to use on the signal data. However, at some point, it might be hard to keep tracking the quality of your methods applied to signals without prior knowledge of this data. Therefore, generating signal data with prior known parameters helps you better understand your program and method.
From DICOM Header to CSV file
The main idea we will depend on is that we can iterate over the DICOM files in a specific folder. Then we will iterate over the whole attributes in each file and extract only the attributes specified in advance. We will use the keywords of DICOM attributes as it’s the best choice because: Each DICOM attribute has its unique keyword. The keywords are better than tags as they are human-readable. There are dozens of attributes that can characterize DICOM files. So, you cannot just read all of them.
Introducing PyDicom, its Classes, Methods, and Attributes.
PyDicom…Beyond Pixel Data If you are a Pythonista and you’re working with Medical Data, especially DICOM data, you’ve probably heard of the great python package PyDicom. In this post, you’ll learn the basics of this package. We’ll discuss PyDicom classes (DataSet, DataElement, Sequence) and some useful methods and attributes that you can apply to PyDicom classes. PyDicom is a pure Python package for working with DICOM files such as medical images, reports, and radiotherapy objects.
Dealing with DICOM Using ImageIO Python Package
Medical Images == DICOM In this post, we will use the ImageIO Python package to read DICOM files, extract metadata and attributes, and plot image slices using interactive slider widgets using Ipywidgets. DICOM is the bread and butter of medical imaging systems. If you are a Biomedical Engineer, an IT Specialist in the healthcare field, or a Healthcare Data Scientist/Analyst, you’ve probably used or at least heard about DICOM because it’s everywhere related to medical imaging systems.
Dealing with DICOM Using ImageIO Python Package
Medical Images == DICOM In this post, we will use the ImageIO Python package to read DICOM files, extract metadata and attributes, and plot image slices using interactive slider widgets using Ipywidgets. DICOM is the bread and butter of medical imaging systems. If you are a Biomedical Engineer, an IT Specialist in the healthcare field, or a Healthcare Data Scientist/Analyst, you've probably used or at least heard about DICOM because it's everywhere related to medical imaging systems.
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