Abstract This study investigates the carbonate system in the northern South China Sea shelf off the Pearl River estuary during the spring of 2023. Contrary to the typical distribution pattern observed in river-dominated coast where dissolved inorganic carbon (DIC) increases offshore, field observations revealed higher DIC in inshore waters (> 1980 µmol kg− 1) than in offshore seawaters (< 1970 µmol kg− 1), with DIC in the coastal zone being 20.9±8.8 µmol kg− 1 higher than that offshore.