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Articles by Simone Gable
Sex chromosome identification and genome curation, at scale, from a single individual with SCINKD
Abstract In most animal species, the sex determining pathway is typically initiated by the presence/absence of a primary genetic cue at a critical point during development. This primary genetic cue is often located on a single locus, referred to as sex chromosomes, and can be limited to females (in a ZZ/ZW system) or males (in an XX/XY system).
Differential Conservation and Loss of CR1 Retrotransposons in Squamates Reveals Lineage-Specific Genome Dynamics across Reptiles
Abstract Transposable elements (TEs) are repetitive DNA sequences which create mutations and generate genetic diversity across the tree of life. In amniotic vertebrates, TEs have been mainly studied in mammals and birds, whose genomes generally display low TE diversity. Squamates (Order Squamata; ~11,000 extant species of lizards and snakes) show as much variation in TE abundance and activity as they do in species and phenotypes.
The State of Squamate Genomics: Past, Present, and Future of Genome Research in the Most Speciose Terrestrial Vertebrate Order
Abstract : Squamates include more than 11,000 extant species of lizards, snakes, and amphisbaenians, and display a dazzling diversity of phenotypes across their over 200-million-year evolutionary history on Earth. Here, we introduce and define squamates (Order Squamata) and review the history and promise of genomic investigations into the patterns and processes governing squamate evolution, given recent technological advances in DNA sequencing, genome assembly, and evolutionary analysis.
A Genomic Perspective on the Evolutionary Diversification of Turtles
New Results Simone M Gable, Michael I Byars, Robert Literman, View ORCID ProfileMarc Tollis doi: https://doi.org/10.1101/2021.10.14.464421 Abstract To examine phylogenetic heterogeneity in turtle evolution, we collected thousands of high-confidence single-copy orthologs from 19 genome assemblies representative of extant turtle diversity and estimated a phylogeny with multispecies coalescent and concatenated partitioned methods.
6 Podcasts You Need In Order To Procrastinate Studying For Finals
Recently, I was standing outside of a restaurant waiting for it open for brunch, when this seemingly nice man came to wait for the doors to open as well. We exchanged pleasantries and talked about Atlanta United winning the MLS Championship. However, when he found out I was studying journalism, everything took a turn. Granted, I am used to being talked at about fake news, alternative facts, and how the media is biased, but this time it was something different.
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