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Simone Leo

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As seen in: Nature, PLOS ONE
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Articles by Simone Leo

A comprehensive European Colorectal Cancer Cohort dataset

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By Petr Holub, Eva Álvarez, Rumyana Proynova, Saher Maqsood, Maxmilian Ataian, Olli Carpén, Gerrit A. Meijer, Rudolf Nenutil, Dalibor Valik, Bárbara Parodi, Esmeralda Castaños-Vélez, Frank Ückert, Diogo Alexandre, Caitlin Ahern, Erik Steinfelder, Marco Moscatelli, Jiří Horák, Vittorio Meloni, Luca Pireddu, Simone Leo, Marco Piras, Stéphanie Gofflot, Sebastian Mate, Hans-Ulrich Prokosch, Paolo Romano, Daniela Pistillo, Michael Hoffmeister, Alexander Brobeil, Berthold Huppertz, Valentina Paleari, Heimo Müller, Robert Reihs, Timo Gemoll, Yannick Bantel, Tobias Sjöblom, Kyriacos Kyriacou, Simona Di Martino, Gennaro Ciliberto, Martina Oberländer, Jens K. Habermann, Per-Henrik Edqvist, Inti Zlobec, Martin Berger, Lars Boeckmann, Fabienne George, Tom Southerington, Daniel Brucker, Laurence Faugeras, Alex Felice, Chiara Fallerini, Alessandra Renieri, Andreas Hadjisavvas, Karine Shahen Sargsyan, Maria Loizidou, Tatiana Besse-Hammer, Jan-Eric Litton, Michael Hummel, Kurt Zatloukal, Marialuisa Lavitrano, Outi Törnwall, Florian Stampe, Irene Schlünder, Annemieke Hiemstra, Mariska Bierkens, Ondřej Vojtíšek, Anna-Liisa Bader, Birgit Simell, Vitomir Horvat, Matteo Gnocchi, Alexander Fürbaß, Francesca Frexia, Cecilia Mascia, Alessandro Sulis, Giovanni Delussu, Mauro Del Rio, Amila Kugic, Ann-Kristin Kock-Schoppenhauer, Gabriele Husmann, Joanna Vella, Malcolm Pace, Franziska Vogl
| Nature Verified
Abstract Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. The Biobanking and Biomolecular Resources European Research Infrastructure (BBMRI-ERIC) established a CRC-Cohort with European coverage contributed by 26 biobanks from 12 countries. This retrospective, multi-center study contains structured and curated clinical data, supporting research on biomarkers for early detection, prognosis, and treatment.
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WorkflowHub: a registry for computational workflows - Scientific Data

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By Ove Johan Ragnar Gustafsson, Sean Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, Jose Fernandez, José Fernandez, José Fernández, Tom Brown, Herve Menager, Björn A. Grüning, Salvador Capella-Gutiérrez, Frederik Coppens
| Nature Verified
Abstract The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing steps, workflows should be reproducible, reusable, adaptable, and available. Workflow sharing presents opportunities to reduce unnecessary reinvention, promote reuse, increase access to best practice analyses for non-experts, and increase productivity.
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Recording provenance of workflow runs with RO-Crate

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By Simone Leo, Michael R Crusoe, Vrije Universiteit Amsterdam, DTL Projects
| PLOS ONE
Loading metrics Open Access Peer-reviewed Research Article Citation: Leo S, Crusoe MR, Rodríguez-Navas L, Sirvent R, Kanitz A, De Geest P, et al. (2024) Recording provenance of workflow runs with RO-Crate. PLoS ONE 19(9): e0309210. https://doi.org/10.1371/journal.pone.0309210 Editor: Ivan Zyrianoff, Alma Mater Studiorum Universita di Bologna: Universita degli Studi di Bologna, ITALY Received: March 4, 2024; Accepted: August 8, 2024; Published: September 10, 2024 Copyright: © 2024 Leo et al.
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eflows4hpc/eddl: Final eFlows4HPC Release

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By Roberto Paredes Palacios, Pedro Lopez, Adrián Castelló, Andrés Tomás, Silvia Homedes Nadal, Jorge Gomez, Jorge Gómez Verified, Rafa Sánchez, Federico Bolelli, Luca Pireddu, Álvaro López Chilet, Michele Cancilla, Stefano Allegretti, Laura Canalini, Costantino Grana, Simone Leo, Izan Catalán, Ynse Hoornenborg
| zenodo.org
Published November 30, 2023 | Version final_eflows4hpc_release Software Open Latest changes performed in the context of the eflows4HPC project Software: https://github.com/eflows4hpc/eddl/tree/final_eflows4hpc_release (URL)
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