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Articles by Taewoo Ryu
Transcriptome and methylome dynamics in the gills of large yellow croaker (Larimichthys crocea) during low-salinity adaption
Background Epigenetic modifications can regulate gene transcription without altering DNA sequences, thus enabling organisms to adapt to environmental challenges (Busconi et al., 2015; Li et al., 2018). Among these epigenetic modifications, DNA methylation is currently among the most well-documented epigenetic modifications, which is critical in the regulation of normal physiological activities and environmental adaption (Richards et al., 2010; Bossdorf and Zhang, 2011).
Genetic linkage map construction and QTL mapping of blade length and width in Saccharina japonica using SSR and SNP markers
1 Introduction Saccharina japonica has been commercially cultivated on large scale in China for nearly seventy years with 2020 productivity of 1651,673 tons (dry weight), production due in part to applications related to elite varieties (FAO, 2022). Generally, new S. japonica varieties have been developed through selection and hybridization related to blade length, blade width and blade thickness (Hwang et al., 2019; Wang et al., 2020).
Calmodulin regulates the calcium homeostasis in mantle of Crassostrea gigas under ocean acidification
Introduction Bivalves are a large taxon of calcifying organisms in the ocean, and they have developed tough shell through biologically controlled mineralization process to protect them against predation, support tissues and preclude desiccation (Simkiss and Wilbur, 1989; Marin et al., 2012).
Single-Cell Sequencing on Marine Life: Application and Future Development
Impact Factor 4.912 | CiteScore 5.0 More on impact › TABLE OF CONTENTS Jing Li1,2†, Hao Wang1† and Chaolun Li1,2,3* 1Center of Deep-Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China 2University of Chinese Academy of Sciences, Beijing, China 3Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China Single-cell RNA-sequencing (scRNA-seq) is the genomic approach that directly examines...
Chromosome-Level Genome Assembly of Acanthogobius ommaturus Provides Insights Into Evolution and Lipid Metabolism
Introduction The Gobiidae is the largest family of marine fishes, which consists of more than 200 genera and nearly 2,000 species, and is characterized by wide distribution, high diversity, and strong adaptability (Tassell, 2011). Acanthogobius ommaturus is a large, demersal, and fast-growing annual fish in the family of Gobiidae, which is widely distributed in coastal waters or brackish waters of the Northwest Pacific Ocean surrounding China, Korea, Japan, and Indonesia (Wu and Zhong, 2008).
Frontiers | Gonad Transcriptome and Whole-Genome DNA Methylation Analyses Reveal Potential Sex Determination/Differentiation Mechanisms of the Deep-Sea Mussel Gigantidas platifrons | Marine Science
Impact Factor 4.912 | CiteScore 5.0 More on impact › TABLE OF CONTENTS Zhaoshan Zhong1,2,3, Minxiao Wang1,2,3, Hao Chen1,2,3, Hao Wang1,2,3, Huan Zhang1,2,3, Li Zhou1,2,3, Yan Sun1,2,3, Lei Cao1,2,3, Chao Lian1,2,3, Mengna Li1,2,3,4 and Chaolun Li1,2,3,4* 1Center of Deep Sea Research, Chinese Academy of Sciences Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China 2Laboratory for Marine Ecology and Environmental...
Comparative Lipidome and Transcriptome Provide Novel Insight Into Polyunsaturated Fatty Acids Metabolism of the Sea Urchin
Impact Factor 4.912 | CiteScore 5.0 More on impact › TABLE OF CONTENTS Heng Wang1†, Wenfei Zhao1†, Xiaoyu Liu1, Debao Gang1, Rantao Zuo1, Lingshu Han2, Yaqing Chang1 and Jun Ding1* 1Key Laboratory of Mariculture and Stock Enhancement in North China’s Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian, China 2School of Marine Sciences, Ningbo University, Ningbo, China The sea urchin Strongylocentrotus intermedius is one of the most economically important echinoids...
No Population Structure of Bigeye Tunas (Thunnus obesus) in the Western and Central Pacific Ocean Indicated by Single Nucleotide Polymorphisms
Introduction The current management strategy for the Western and Central Pacific Ocean (WCPO) bigeye tuna (Thunnus obesus, Lowe 1839) fishery is based on a “single-stock” paradigm. However, the recent discovery of population structure using genomic analyses of yellowfin tuna (T.
Interactive Regulations of Dynamic Methylation and Transcriptional Responses to Recurring Environmental Stresses During Biological Invasions
Introduction Nowadays, species constantly suffer from various environmental challenges derived from multiple interacting factors such as global climate change and frequent anthropogenic activities. The ability of species to rapidly respond and adapt to fluctuating environments is pivotal for their survival, particularly for invasive species.
The epigenetic landscape of transgenerational acclimation to ocean warming
Epigenetic inheritance is a potential mechanism by which the environment in one generation can influence the performance of future generations1. Rapid climate change threatens the survival of many organisms; however, recent studies show that some species can adjust to climate-related stress when both parents and their offspring experience the same environmental change2,3. Whether such transgenerational acclimation could have an epigenetic basis is unknown.
Correction: miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria
The authors would like to correct the Author Contributions.
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