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Published September 29, 2026 | Version v1.0 Supporting data for Persistent detection of two genetically and geographically distinct cryptic SARS-CoV-2 lineages in the Netherlands, currently under review. Files: barcodes_all_sites.feather: Freyja SARS-Cov-2 mutation barcodes supplemented with sixteen cryptic sublineage definitions, including all substitutions from reconstructed phylogenies.
Single-cell datasets Three different scRNA-seq datasets were included in this study, both for benchmarking the associations and for combined meta-analysis of co-expression QTLs. All five datasets from the three studies were generated from human PBMCs and are referred to by their first author: the Oelen dataset (n = 104 donors) [11], the van der Wijst dataset (n = 45 donors) [10], and the van Blokland dataset (n = 38 cardiac patients) [20].
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