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Articles by Zi Hao
Rewiring of SINE-MIR enhancer topology and Esrrb modulation in expanded and naive pluripotency - Genome Biology
E14 mouse embryonic stem cells (ESCs) were cultured in LIF-serum medium comprised of DMEM high glucose (Hyclone) supplemented with 15% ES cell FBS (Gibco), 2 mM L-glutamine (Gibco), 1X Pen-Strep (Gibco), 100 μM MEM non-essential amino acids (Gibco), 100 μM β-mercaptoethanol (Gibco), and 1000 U/mL leukemia inhibitory factor (LIF; ESGRO, Millipore).
A Curated Rotamer Library for Common Post-Translational Modifications of Proteins
Sidechain rotamer libraries of the common amino acids of a protein are useful for folded protein structure determination and for generating ensembles of intrinsically disordered proteins (IDPs). However much of protein function is modulated beyond the translated sequence through thFiguree introduction of post-translational modifications (PTMs).
Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments
The Local Disordered Region Sampling (LDRS, pronounced loaders) tool is a new module developed for IDPConformerGenerator (Teixeira et al. 2022), a previously validated approach to model intrinsically disordered proteins (IDPs). The IDPConformerGenerator LDRS module provides a method for generating all-atom conformations of intrinsically disordered regions (IDRs) at N- and C-termini of and in loops or linkers between folded regions of an existing protein structure.
Teleost TRAF7, a protein functions in the host antiviral responses via NF-κB and IRF3/7 mediated signaling
1 Introduction As the first line of defense against pathogen invasion and tissue damage, the innate immune system plays vital roles in the host immune responses (Langevin et al., 2013; Kordon et al., 2018; Stosik et al., 2021), which is depended on the recognition of various pathogen-associated molecular patterns (PAMPs) or damage-associated molecular patterns (DAMPs) through the pattern recognition receptors (PRRs) (Kumar et al., 2011; Brubaker et al., 2015; Stosik et al., 2021).
A novel lncRNA MDHDH suppresses glioblastoma multiforme by acting as a scaffold for MDH2 and PSMA1 to regulate NAD+ metabolism and autophagy
Journal of Experimental & Clinical Cancer Research, Dec 2022 This is a preview of a remote PDF: https://jeccr.biomedcentral.com/counter/pdf/10.1186/s13046-022-02543-7 He, Dong, Xin, Tao, Pang, Bo, Sun, Jun, Liu, Zi Hao, Qin, Zhen, Ji, Xiao Shuai, Yang, Fan, Wei, Yan Bang, Wang, Zi Xiao, Gao, Jia Jia, Pang, Qi, Liu, Qian. , Journal of Experimental & Clinical Cancer Research, 2022, pp. 1-26, Volume 41, Issue 1, DOI: 10.1186/s13046-022-02543-7
Teleost TRAF7, a Protein Functions in the Host Antiviral Responses via NF-κB and IRF3/7 Mediated Signaling
Peng Tian Li1, Ying Li2, Ying Chen1, Zi Hao Luo1, Yi Fan Zhang1, Jing Jiang1, Yi Lei Wang1, Zi Ping Zhang3, Yong Hua Jiang1 and Peng Fei Zou1* 1Fisheries College, Jimei University, China 2Xiamen University Tan Kah Kee College, China 3College of Marine Science, Fujian Agriculture and Forestry University, China Provisionally accepted: The final, formatted version of the article will be published soon.
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