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Pathogenic bacteria represent a considerable danger for human health worldwide. For effective outbreak detection and epidemiological surveillance, bacterial pathogens must be rapidly identified. For this, the pathogen is usually isolated and various molecular typing methods used, most are based on polymerase chain reaction, or, in the last few years, whole-genome sequencing (WGS) (Inouye et al., 2014; Hasman et al., 2014).
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