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Anders Sune Pedersen

As seen in: BioRxiv
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Articles

nf-core/sarek: 3.5.1 - Akkatjåkkå

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By Maxime Garcia, Friederike Hanssen, Anders Sune Pedersen, Gisela Gabernet
| zenodo.org
Published February 18, 2025 | Version 3.5.1 Software Open What's Changed Bump schema version to 2.2.1 in https://github.com/nf-core/sarek/pull/1767 by @FriederikeHanssen Merge intervals for WES in GATK GenomicsDBImport in https://github.com/nf-core/sarek/pull/1777 by @tdanhorn Use file-path-pattern over file-path to hanlde glob for known_indels and known_indels_tbi to fix https://github.com/nf-core/sarek/issues/1785 in https://github.com/nf-core/sarek/pull/1797 by @maxulysse Update GHA for...
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Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery

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By Friederike Hanssen, Maxime Garcia, Lasse Folkersen, Anders Sune Pedersen
| BioRxiv
Abstract DNA variation analysis has become indispensable in many aspects of modern biomedicine, most prominently in the comparison of normal and tumor samples. Thousands of samples are collected in local sequencing efforts and public databases requiring highly scalable, portable, and automated workflows for streamlined processing. Here, we present nf-core/sarek 3, a well-established, comprehensive variant calling and annotation pipeline for germline and somatic samples.
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Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery

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By Friederike Hanssen, Maxime Garcia, Lasse Folkersen, Anders Sune Pedersen
| BioRxiv
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