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Baraa Orabi

As seen in: BioRxiv
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Articles

TKSM: Highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator

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By Fatih Karaoğlanoğlu, Baraa Orabi, Ryan Flannigan, Cedric Chauve
| BioRxiv
Thank you for your interest in spreading the word about bioRxiv. NOTE: Your email address is requested solely to identify you as the sender of this article. Your Email * Your Name * Send To * Enter multiple addresses on separate lines or separate them with commas. Message Subject (Your Name) has forwarded a page to you from bioRxiv Message Body (Your Name) thought you would like to see this page from the bioRxiv website.
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scTagger: Fast and accurate matching of cellular barcodes across short- and long-reads of single-cell RNA-seq experiments

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By Ghazal Ebrahimi, Meghan Robinson, Cedric Chauve, Baraa Orabi
| BioRxiv
Abstract Single-cell RNA sequencing allows for characterizing the gene expression landscape at the cell type level. However, because of its use of short-reads, it is severely limited at detecting full-length features of transcripts such as alternative splicing. New library preparation techniques attempt to extend single-cell sequencing by utilizing both long- and short-reads.
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