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Reannotation of cancer mutations based on expressed RNA transcripts reveals functional non-coding mutations in melanoma
Keywords synonymous mutations non-coding mutations melanoma functional genomics CRISPR-Cas9 gene regulation bioinformatics mutation annotation expressed transcript Introduction Next-generation sequencing technologies have revolutionized the detection of mutations in cancer samples. Currently, the majority of clinicians and scientists interpreting cancer sequencing results only consider mutations that alter the amino acid sequence of proteins.
Integration of Optical Genome Mapping in the Cytogenomic and Molecular Work‐Up of Hematological Malignancies: Expert Recommendations From the International Consortium for Optical Genome Mapping
Conflicts of Interest The authors declare no conflicts of interest. References 1, , , et al., “The 5th Edition of the World Health Organization Classification of Haematolymphoid Tumours: Myeloid and Histiocytic/Dendritic Neoplasms,” Leukemia 36, no. 7 (2022): 1703–1719. 2, , , et al., “International Consensus Classification of Myeloid Neoplasms and Acute Leukemias: Integrating Morphological, Clinical, and Genomic Data,” Blood 140, no. 11 (2022): 1200–1228, https://doi.org/10.1182/blood.2022015850.
Integrating Optical Genome Mapping With TP53 FISH: A Synergistic Approach for Cytogenomic Analysis in Chronic Lymphocytic Leukemia
Dear Editor, Fluorescence in situ hybridization (FISH) is the gold standard technique for cytogenetic assessment in chronic lymphocytic leukemia (CLL). In addition, chromosome banding analysis (CBA) is recommended as part of testing to detect complex karyotypes (CK, ≥ 3 abnormalities in the same cell clone), especially as those with a high-CK (≥ 5 abnormalities) have a known worst outcome [1, 2].
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