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Barry Demchak on Muck Rack

Barry Demchak

As seen in: Genome Biology
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Articles

Cytoscape Automation: empowering workflow-based network analysis

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By Barry Demchak, John Morris, David Otasek, Jorge Bouças
| Genome Biology Verified
Abstract Cytoscape is one of the most successful network biology analysis and visualization tools, but because of its interactive nature, its role in creating reproducible, scalable, and novel workflows has been limited. We describe Cytoscape Automation (CA), which marries Cytoscape to highly productive workflow systems, for example, Python/R in Jupyter/RStudio.
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By Michael Kramer, Michael Yu, Keiichiro Ono, Katherine Licon, Suresh Subramani, Trey Ideker, Jean-Claude Farré, Koyel Mitra, Barry Demchak, Mitchell Flagg, Rama Balakrishnan, J. Michael Cherry
| secure.jbs.elsevierhealth.com
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