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Articles

Introgression between highly divergent fungal sister species

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By Vilde Bruhn Kinneberg, Dabao Sun Lu, David Peris, CSIC Valencia Spain
| Wiley Online Library Verified
Network analysis with TreeMix To further explore possible introgression events and direction of introgression, we applied a network analysis with TreeMix (Pickrell & Pritchard, 2012). To prepare the VCF-file (Dataset-O 2) for analysis, we removed sites with missing data using VCFtools (with ‘--max-missing 1’) and linkage pruned the data using PLINK.
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