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Results We comprehensively screened the NCBI SRA database for microbial community sequencing samples and downloaded raw reads and metadata for 2,390,937 samples (52,950 studies). This screen was purposefully inclusive, selecting any sequencing projects with metadata keywords matching “metagen∗,” “microbi∗,” “bacteria,” or “archaea,” and thus covering microbial data from 16S, 18S, and metagenomic experiments across diverse technologies (e.g., amplicon and whole-genome shotgun [WGS]).
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