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Gisou van der Goot on Muck Rack

Gisou van der Goot

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Articles

A Single-organoid Workflow for quantitative Imaging classiFication and Tracking (SWIFT)

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By Lucie Bracq, Romain Guiet, Sandra Offner, Beatrice Kunz, Gisou van der Goot
| Nature Verified
Abstract SWIFT (Single-organoid Workflow for quantitative Imaging classiFication and Tracking) is a fast and modular pipeline for quantitative, time-resolved organoid analysis from brightfield images. Requiring only minimal training annotations, SWIFT combines YOLOv8, SAM, and application-specific object classification to deliver accurate single-organoid segmentation, phenotyping, and tracking. The workflow is robust across organoid types and microscope systems.
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