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Articles by Henry CS
Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline
From the previous figures, we demonstrated that Prolipipe has significant potential for studying large-scale datasets of bacterial genomes and enables two key analyses. The first key analysis is a large-scale detection of bacterial strains which are promising candidates for the effective production or degradation of metabolites based on their genome content.
Behaviour-structure interplay drives acoustic signal divergence: emergence of multiple mechanisms in closely related crickets
Behaviour-structure interplay drives acoustic signal divergence: emergence of multiple mechanisms in closely related crickets 1Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE-PSL, Université des Antilles, Paris, France 2Marseille, France 3Division of Science, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates 4Laboratório de Bioinformática e Evolução, Departamento de Biologia Geral, Universidade...
Analysis of microbial diversity and functions in sediments and overlying water of the Shiliu River
Analysis of microbial diversity and functions in sediments and overlying water of the Shiliu River 1Department of Life Sciences, Tangshan Normal University, Tangshan, Hebei, China 2Institute for Microbiological Examination, Shijiazhuang Center for Disease Control and Prevention, Shijiazhuang, Hebei, China 3College of Life Sciences, Agricultural University of Hebei, Baoding, Hebei, China 4Hebei Green Dream Environmental Science & Technology Co., Ltd, Tangshan, Hebei, China DOI...
Virseqimprover: an integrated pipeline for viral contig error correction, extension, and annotation
Virseqimprover: an integrated pipeline for viral contig error correction, extension, and annotation 1Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America 2Department of Cell & Molecular Biology, St. Jude Children’s Research Hospital, Memphis, TN, United States of America 3Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA,...
Seasonal dynamics in leaf litter decomposing microbial communities in temperate forests: a whole-genome- sequencing-based study
Seasonal dynamics in leaf litter decomposing microbial communities in temperate forests: a whole-genome- sequencing-based study 1Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Lomma, Skane, Sweden, Lomma, Sweden 2Department of Ecology and Environmental Conservation, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland 3Chemical Department of Perm, State University, Perm, Russia 4Faculty of Geography of Perm,...
neo4jsbml: import systems biology markup language data into the graph database Neo4j
neo4jsbml: import systems biology markup language data into the graph database Neo4j 1Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France 2Université Paris-Saclay, INRAE, MaIAGE, Jouy-en-Josas, France DOI 10.7717/peerj.16726 Academic Editor Ravi Kant Subject Areas Bioinformatics, Computational Biology, Computational Science Keywords SBML, Neo4j, Database, Neo4jsbml, Genome-scale metabolic model Copyright © Licence This is an open access article distributed...
Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
The rapid proliferation of high-throughput sequencing in metagenomics, combined with the advancement of scalable computational tools, has allowed scientists to digitally isolate tens of thousands of microbial genomes from large collections of metagenomic datasets (Nayfach et al., 2021).
A toolkit of thread-based microfluidics, sensors, and electronics for 3D tissue embedding for medical diagnostics
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Physical and chemical sensors, a microfluidic network, and interconnects are three components of the envisioned 3D TDD platform for intimate tissue integration. Functional threads, such conductive threads, nano-infused threads and hydrophilic threads, serve as building blocks for the realization of these components.
By Ali Khademhosseini, Hammock ML, Tee BCK, Kim DH, Najafabadi AH, Sun J-Y, Whitesides GM, Windmiller JR, Valdés-Ramírez G, Choi WM, Martinez AW, Phillips ST, Wiley BJ, Crooks RM, Ellington AD, Henry CS, Ahn BY, Adams JJ, Sackmann EK-H, Schwantes EA, Mirica KA, Bandodkar AJ, Valdes-Ramirez G, Huang C-T, Shen C-L, Tang C-F, Yao MY, Karahan HA, Wicaksono DHB, Zhou GZ, Hong HP, Lee MJ, Müller-Lissner S, Podolsky DK, Chung HJ, Sulkin MS, Kim JS, Easton EB, Dokmeci MR, Siegel AC, Dickey MD, Frost MC, Meyerhoff ME, Pooria Mostafalu, Mohsen Akbari, Kyle A. Alberti
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British Journal of Cancer
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