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Highlights • We genotyped clinical K. pneumoniae isolates in 24 patients with Klebsiella liver abscess. • We analyzed the stool metagenomes of patients and their cohabiting domestic partners. • We identified K. pneumoniae in 33% of index patient’s stools. • We identified one index patient’s clinical isolate in their domestic partner’s stool. • This could represent a transmission event or exposure to a common environmental source.
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