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Mono vs Di nucleotide shuffling of ScanFold 2.0 When comparing SF1 and SF2 results for mononucleotide shuffling there is an average difference in percent paired of 2.00% (0.03% to 4.5%) and in the majority of cases SF2 is predicting more pairs than SF1. For all results other than HIV and SARS-CoV-2 all pairs (no filter), SF2 consistently predicts more pairs than SF1.
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