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Lianghu Qu

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Articles

Genomic coordination of nucleotide skews and gene strand distribution driven by GC-content in prokaryotes

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By Wenkai Teng, Xiaofeng Zhou, Lianghu Qu
| Wiley Online Library Verified
Conflicts of Interest The authors declare no conflict of interest. Data Availability Statement All genome data used in this study were downloaded from the NCBI RefSeq database (https://www.ncbi.nlm.nih.gov/refseq/). The generated leading sequences and their Z curves, as well as evolutionary models and the scripts generating them, are available on both Figshare (https://doi.org/10.6084/m9.figshare.30529172) and Science Data Bank (https://doi.org/10.57760/sciencedb.39047).
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An encyclopedic regulatory and functional atlas of RNA interactomes

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By Keren Zhou, Junhong Huang, Shurong Liu, Wujian Zheng, Shun Liu, Yinan Cao, Yibo Chen, Xinping Hu, Li Cai, Jie Zhou, Penghui Lin, Jiajia Xuan, Junhao Li, Lingling Zheng, Lianghu Qu, Jianjun Chen, Jianhua Yang, Yinghao Xing, Fangzhou Xie, Lahong Xu
| Nature Verified
Abstract RNA molecules interact extensively with each other and with RNA-binding proteins (RBPs) to regulate gene expression. To improve detection of RBP–RNA and RNA–RNA interactions, we developed the rbsSeeker and rriScan tools and integrated the interactions into the Encyclopedia of RNA Interactomes (ENCORI), providing web-based modules to explore RNA interactions.
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Author Correction: RIP-PEN-seq identifies a class of kink-turn RNAs as splicing regulators

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By Shurong Liu, Peng Yu, Di Wu, Jie Zhou, Ping Zhang, Chang Liu, Qiao Lin, Jiayi Ye, Simeng He, Hui Zhou, Jianjun Chen, Lianghu Qu, Jianhua Yang, Wujian Zheng, Anrui Liu, Qiaojuan Huang
| Nature Verified
Correction to: Nature Biotechnology https://doi.org/10.1038/s41587-023-01749-0, published online 10 April 2023. In the version of this article initially published, there was an error in Fig. 6d and associated source data. Due to a copy-paste mistake during data organization, the values from the second biological replicate (rep2) were unintentionally duplicated and entered in place of the corresponding values from the third biological replicate (rep3).
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