Martina Summer-Kutmon on Muck Rack

Martina Summer-Kutmon

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Articles

Pathway information extracted from 25 years of pathway figures

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By Kristina Hanspers, Anders Riutta, Alexander R. Pico, Martina Summer-Kutmon
| Genome Biology Verified
Abstract Thousands of pathway diagrams are published each year as static figures inaccessible to computational queries and analyses. Using a combination of machine learning, optical character recognition, and manual curation, we identified 64,643 pathway figures published between 1995 and 2019 and extracted 1,112,551 instances of human genes, comprising 13,464 unique NCBI genes, participating in a wide variety of biological processes.
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