Mathieu Linares on Muck Rack

Mathieu Linares

Stockholm
As seen in: Nature, Wiley Online Library, Royal Society of Chemistry
Application Expert at PDC @KTH. Working on the interoperability of #compchem tools: #GROMACS #VeloxChem #VIAMD
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Articles

Multiphoton Absorption Spectra of Channelrhodopsin-2 via Multiscale Simulation Methods

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By David Carrasco-Busturia, Mathieu Linares, Patrick Norman
| dx.doi.org
1. Introduction Click to copy section linkSection link copied! A breakthrough in neuroscience occurred when a technique was developed that allowed the precise control of neuronal activity using light. (1,2) This technique, termed optogenetics, (3) employs light-sensitive proteins genetically introduced into neuronal cell membranes to manipulate cellular processes optically.
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Distinct Heterocyclic Moieties Govern the Selectivity of Thiophene‐Vinylene‐Based Ligands towards Aβ or Tau Pathology in Alzheimer's Disease

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By Linnea Björk, Hamid Shirani, Yogesh Todarwal, Mathieu Linares
| Wiley Online Library
Introduction Propagation and spread of pathogenic protein aggregates are the pathological hallmarks of a wide range of proteopathic neurodegenerative diseases,1-4 including Alzheimer's disease (AD), and a variety of small ligands, such as derivatives of Congo red and thioflavins, that are selective for protein aggregates having an extensive repetitive cross β-pleated sheet conformation have been developed.5-19 In AD, the proteinaceous deposits are composed of the amyloid-β (Aβ) peptide or the...
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VIAMD: a Software for Visual Interactive Analysis of Molecular Dynamics

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By Robin Skanberg, Ingrid Hotz, Anders Ynnerman, Mathieu Linares
Molecular dynamics (MD) analysis can be summarized as the process of studying properties from simulated molecular systems. During the simulation, a base set of properties, such as coordinates and energies, is periodically sampled and written as output. These base properties are then examined directly or used indirectly as inputs to derive new properties.
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