Maude M David on Muck Rack

Maude M David

As seen in: PLOS, Pharma Focus Asia
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Articles

Learning a Deep Language Model for Microbiomes: The Power of Large Scale Unlabeled Microbiome Data

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By Quintin Pope, Rohan Varma, Christine Tataru, Maude M David
| Pharma Focus Asia
Quintin Pope, Rohan Varma, Christine Tataru, Maude M David, Xiaoli Fern. Abstract We use open source human gut microbiome data to learn a microbial “language” model by adapting techniques from Natural Language Processing (NLP). Our microbial “language” model is trained in a self-supervised fashion (i.e., without additional external labels) to capture the interactions among different microbial taxa and the common compositional patterns in microbial communities.
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Learning a deep language model for microbiomes: The power of large scale unlabeled microbiome data

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By Quintin Pope, Rohan Varma, Christine Tataru, Maude M David
| PLOS
Citation: Pope Q, Varma R, Tataru C, David MM, Fern X (2025) Learning a deep language model for microbiomes: The power of large scale unlabeled microbiome data. PLoS Comput Biol 21(5): e1011353. https://doi.org/10.1371/journal.pcbi.1011353 Editor: Stacey D. Finley, University of Southern California, UNITED STATES OF AMERICA Received: July 25, 2023; Accepted: March 24, 2025; Published: May 7, 2025 Copyright: © 2025 Pope et al.
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