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Sofie Holtsmark Nielsen

As seen in: Nature, BioRxiv
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Articles

The spatiotemporal distribution of human pathogens in ancient Eurasia - Nature

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By Martin Sikora, Elisabetta Canteri, Antonio Fernandez-Guerra, Nikolay Oskolkov, Evan K. Irving-Pease, Barbara Mühlemann, Sofie Holtsmark Nielsen, Gabriele Scorrano, Morten E. Allentoft, Hannes Schroeder, Jesper Stenderup, Terry Jones, Björn Nystedt, Julian Parkhill, Lars Fugger, Fernando Racimo, Kristian Kristiansen
| Nature Verified
Abstract Infectious diseases have had devastating effects on human populations throughout history, but important questions about their origins and past dynamics remain1. To create an archaeogenetic-based spatiotemporal map of human pathogens, we screened shotgun-sequencing data from 1,313 ancient humans covering 37,000 years of Eurasian history.
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Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens - Nature Communications

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By Verónica Mixão, Miguel Pinto, Holger Brendebach, Daniel Sobral, Nicolas Radomski, Claudia Coipan, Rolf Kaas, Sofie Holtsmark Nielsen, João Gomes, Adriano Di Pasquale
| Nature Verified
Abstract Different laboratories employ different Whole-Genome Sequencing (WGS) pipelines for Food and Waterborne disease (FWD) surveillance, casting doubt on the comparability of their results and hindering optimal communication at intersectoral and international levels.
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Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave (Sicily, Italy)

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By Sofie Holtsmark Nielsen, Meaghan Mackie, Gabriele Scorrano, Domenico Lo Vetro
| BioRxiv
New Results Gabriele Scorrano, Sofie Holtsmark Nielsen, Domenico Lo Vetro, Meaghan Mackie, Ashot Margaryan, Anna K. Fotakis, Cristina Martinez-Labarga, Pier Francesco Fabbri, Morten E. Allentoft, Marialetizia Carra, Fabio Martini, Olga Rickards, Jesper V.
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