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Articles by Thomas HR
Physiological sub-typing of cold and freezing injury in Triticum turgidum subspecies with bioinformatic and expression characterization of glutathione reductase
This study evaluated the responses of T. turgidum subspecies to cold and freezing stress at the molecular, physiological, and biochemical levels. The bioinformatic characterization of TtGR genes, including their classification, structural features, and expression profiles, provided a genomic framework for interpreting stress responses. The results indicate that responses to low-temperature stress are genotype-dependent and closely associated with the regulation of cellular redox balance.
Integrated transcriptomic and metabolomic analyses reveal biphasic thermal adaptation strategies in Lavandula angustifolia under high-temperature stress
Integrated transcriptomic and metabolomic analyses reveal biphasic thermal adaptation strategies in Lavandula angustifolia under high-temperature stress 1College of Biological Science and Technology, Yili Normal University, Yining, Xinjiang, China 2Xinjiang Key Laboratory of Lavender Conservation and Utilization, Yili Normal University, Yining, Xinjiang, China DOI 10.7717/peerj.21294 Academic Editor Scott Edmunds Subject Areas Agricultural Science, Plant Science Keywords Lavandula...
Multiomics analysis reveals the biochemical and genetic bases of Coffea arabica L. fruit color
Multiomics analysis reveals the biochemical and genetic bases of Coffea arabica L. fruit color 1School of Tea and Coffee, Pu’er University, Pu’er, China 2College of Urban Construction, Zhejiang Shuren University, Hangzhou, China DOI 10.7717/peerj.20305 Academic Editor Ana Ribeiro-Barros Subject Areas Genetics, Genomics, Molecular Biology, Plant Science Keywords Anthocyanin, Carotenoid, Mutiomics, Genes, Coffea arabica L.
Comprehensive genome characterization and expression analysis of the DUF4228 gene family in Sorghum ( Sorghum bicolor L.) under salt stress conditions
Comprehensive genome characterization and expression analysis of the DUF4228 gene family in Sorghum (Sorghum bicolor L.) under salt stress conditions 1University of Khartoum, Faculty of Agriculture, Shambat, Sudan 2Yangzhou University, The Joint International Research Laboratory of Agriculture and Agri-Product Safety, Ministry of Education of China, Jiangsu, China 3Alexandria University, Department of Floriculture and Landscape, Faculty of Agriculture, Alexandria, Egypt 4Yangzhou University,...
Genome-wide identification of WRKY gene family members in Populus trichocarpa and their response to biotic stresses
Genome-wide identification of WRKY gene family members in Populus trichocarpa and their response to biotic stresses 1Jilin Provincial Key Laboratory of Tree and Grass Genetics and Breeding, College of Forestry and Grassland, Jilin Agriculture University, Changchun, China 2Tree Genetics and Breeding, Northeast Forestry University, Harbin, China DOI 10.7717/peerj.21132 Academic Editor Dagmara Żyła Subject Areas Agricultural Science, Bioinformatics, Genomics Keywords Populus trichocarpa, WRKY...
MADS-box gene expression patterns correlate with drought and salt stress responses in Kentucky bluegrass ( Poa pratensis L.)
MADS-box gene expression patterns correlate with drought and salt stress responses in Kentucky bluegrass (Poa pratensis L.) 1College of Life Sciences, Agriculture and Forestry, Qiqihar University, Qiqihar, China 2Institute of Biochemistry, College of Life-Sciences and Medicine, Zhejiang Sci-Tech University, Zhejiang, Hangzhou, China 3Key Laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing, China 4Agriculture, Abdul Wali Khan...
Gene mapping and development of molecular markers for thousand-grain weight in rye based on bulked segregant analysis
Gene mapping and development of molecular markers for thousand-grain weight in rye based on bulked segregant analysis 1Hebei Key Laboratory of Crop Stress Biology, Qinhuangdao, Hebei, China 2College of Agronomy and Biotechnology, Hebei Normal University of Science and Technology, Qinhuangdao, He Bei, China DOI 10.7717/peerj.20811 Academic Editor Yunfeng Xu Subject Areas Agricultural Science, Genetics, Plant Science Keywords Secale L., BSA-seq, Thousand-grain weight, CP hybrid population, KASP...
Genome-wide identification and drought-responsive root expression profiling of the VQ gene family in proso millet (Panicum miliaceum L.)
Genome-wide identification and drought-responsive root expression profiling of the VQ gene family in proso millet (Panicum miliaceum L.) 1Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, Hebei, China 2Key Laboratory of Minor Crops in Hebei, Shijiazhuang, Heibei, China DOI 10.7717/peerj.20792 Academic Editor Nicole Nogoy Subject Areas Bioinformatics, Genomics, Molecular Biology, Plant Science Keywords Proso millet, VQ gene family, Genome-wide...
Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during stem in tumorous stem mustard
Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during stem in tumorous stem mustard 1Chongqing Key Laboratory of Big Data for Bio Intelligence, School of Life Health Information Science and Engineering, Chongqing University of Post and Telecommunications, Chongqing, China 2Chongqing Hospital of Traditional Chinese Medicine, Chongqing, China DOI 10.7717/peerj.20518 Academic Editor Vladimir Uversky Subject Areas Agricultural Science,...
Comparative genomics and phylogenetic analysis of seven Ficus species based on chloroplast genomes
Comparative genomics and phylogenetic analysis of seven Ficus species based on chloroplast genomes 1Guilin Medical University, Guilin, Guangxi, China 2Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guangxi Institute of Botany, Guilin, Guangxi, China 3Changzhi University, Department of Life Sciences, Changzhi, Shanxi, China DOI 10.7717/peerj.20531 Academic Editor Diaa Abd El-Moneim Subject Areas Genomics, Molecular Biology, Plant Science Keywords Ficus, Comparative genomics,...
Analysis of the chitin synthase gene family in Ganoderma lucidum: its structure, phylogeny, and expression patterns
Analysis of the chitin synthase gene family in Ganoderma lucidum: its structure, phylogeny, and expression patterns Institute of Special Economic Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, Jilin, China DOI 10.7717/peerj.20302 Academic Editor Rodrigo Nunes-da-Fonseca Subject Areas Agricultural Science, Bioinformatics, Mycology Keywords Chitin synthase gene family, Ganoderma lucidum, Genome-wide identification, Bioinformatics, Expression analysis Copyright ©...
Genome-wide identification of calcium-dependent protein kinase (CDPK) family members in Phaseolus vulgaris L. and expression analysis during abiotic stresses
Genome-wide identification of calcium-dependent protein kinase (CDPK) family members in Phaseolus vulgaris L.
Genome-wide identification and expression analysis of the HSP70 gene family in Artemisia annua L. under heat stress
Genome-wide identification and expression analysis of the HSP70 gene family in Artemisia annua L.
Genomewide analysis of the Class III peroxidase gene family in apple (Malus domestica)
Genomewide analysis of the Class III peroxidase gene family in apple (Malus domestica) 1College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, China 2Qingdao Academy of Agricultural Science, Qingdao, China 3Qilu University of Technology, Jinan, China DOI 10.7717/peerj.19741 Academic Editor Ganesh Nikalje Subject Areas Agricultural Science, Genomics, Molecular Biology, Plant Science Keywords Apple, PRX, Genome-wide, Expression patterns, Rootstock Copyright ©...
Genome-wide identification and characterization of the KNOX gene family in Vitis amurensis
Genome-wide identification and characterization of the KNOX gene family in Vitis amurensis Institute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun, China DOI 10.7717/peerj.19250 Academic Editor Diaa Abd El-Moneim Subject Areas Agricultural Science, Bioinformatics, Genetics, Molecular Biology, Plant Science Keywords KNOX gene family, Vitis amurensis, Expression analysis, Genome-wide identifications, Bioinformatic Copyright © Licence This is an open...
Genome-wide survey and expression analysis of the OMT gene family in Stephania japonica
Genome-wide survey and expression analysis of the OMT gene family in Stephania japonica 1Institute of Herbgenomics, Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China 2College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China DOI 10.7717/peerj.18600 Academic Editor Vladimir Uversky Subject Areas Bioinformatics, Genomics, Molecular Biology, Plant Science Keywords Stephania japonica,...
Genome-wide analyses of the NAC transcription factor gene family in Acer palmatum provide valuable insights into the natural process of leaf senescence
Genome-wide analyses of the NAC transcription factor gene family in Acer palmatum provide valuable insights into the natural process of leaf senescence 1School of Forestry & Landscape Architecture, Anhui Agricultural University, Hefei, Anhui, China 2College of Urban Construction, Zhejiang Shuren University, Hangzhou, Zhejiang, China 3Institute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China DOI 10.7717/peerj.18817 Academic Editor Jonathan Thomas...
Genome-wide identification and expression analysis of C2H2 zinc finger proteins in Chinese jujube (Ziziphus jujuba Mill.) in different fruit development stages and under different levels of water stress
Genome-wide identification and expression analysis of C2H2 zinc finger proteins in Chinese jujube (Ziziphus jujuba Mill.) in different fruit development stages and under different levels of water stress 1Puer University, Puer, China 2School of Landscape and Ecological Engineering, Hebei University of Engineering, Handan, China 3Camphor Engineering Technology Research Center for National Forestry and Grassland Administration, Jiangxi Academy of Forestry, Nanchang, China DOI 10.7717/peerj.18455...
Genome-wide identification, expression pattern and interacting protein analysis of INDETERMINATE DOMAIN (IDD) gene family in Phalaenopsis equestris
Genome-wide identification, expression pattern and interacting protein analysis of INDETERMINATE DOMAIN (IDD) gene family in Phalaenopsis equestris 1College of Bioengineering, Jingchu University of Technology, Jingmen, Hubei, China 2Hubei Engineering Research Center for Specialty Flowers Biological Breeding, Jingchu University of Technology, Jingmen, Hubei, China DOI 10.7717/peerj.18073 Academic Editor Lin Zhang Subject Areas Agricultural Science, Bioinformatics, Molecular Biology, Plant...
Genome-wide identification and expression analyses of SWEET gene family reveal potential roles in plant development, fruit ripening and abiotic stress responses in cranberry (Vaccinium macrocarpon Ait)
Genome-wide identification and expression analyses of SWEET gene family reveal potential roles in plant development, fruit ripening and abiotic stress responses in cranberry (Vaccinium macrocarpon Ait) 1Jilin Agricultural University, College of Horticulture, Changchun, China 2Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Sciences, Changchun, China DOI 10.7717/peerj.17974 Academic Editor Andrew Eamens Subject Areas Agricultural Science, Biochemistry, Bioinformatics,...
Arbuscular mycorrhizal fungi enhance drought resistance in Bombax ceiba by regulating SOD family genes
Arbuscular mycorrhizal fungi enhance drought resistance in Bombax ceiba by regulating SOD family genes 1College of Biological Resource and Food Engineering, Center for Yunnan Plateau Biological Resources Protection and Utilization, Qujing Normal University, Qujing, Yunnan, China 2Qujing Normal University, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, Qujing, Yunnan, China DOI 10.7717/peerj.17849...
Genome-wide analysis of cellulose synthase (CesA) and cellulose synthase-like (Csl) proteins in Cannabis sativa L
Genome-wide analysis of cellulose synthase (CesA) and cellulose synthase-like (Csl) proteins in Cannabis sativa L 1Department of Agricultural Biotechnology, Faculty of Agriculture, University of Eskişehir Osmangazi, Eskişehir, Türkiye 2Agricultural Biotechnology Laboratory, Department of Plant Science and Landscape Architecture, University of Connecticut, Storrs, CT, United States of America DOI 10.7717/peerj.17821 Academic Editor Douglas Domingues Subject Areas Agricultural Science,...
Genome-wide identification of gene families related to miRNA biogenesis in Mangifera indica L. and their possible role during heat stress
Genome-wide identification of gene families related to miRNA biogenesis in Mangifera indica L.
Expression profile analysis of cotton fiber secondary cell wall thickening stage
Expression profile analysis of cotton fiber secondary cell wall thickening stage 1Cotton Institute, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang, China 2Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, USA 3Engineering Research Center of Coal-based Ecological Carbon Sequestration Technology of the Ministry of Education, Key Laboratory of Graphene Forestry Application of National Forest and Grass Administration, Shanxi Datong...
Exploring the plasmodesmata callose-binding protein gene family in upland cotton: unraveling insights for enhancing fiber length
Haibo Zhang conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft. Xianghui Xiao conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.
Genomic organization and expression profiles of nitrogen assimilation genes in Glycine max
Genomic organization and expression profiles of nitrogen assimilation genes in Glycine max 1Joint International Research Laboratory of Agriculture and Agri-Product Safety, the Ministry of Education of China, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou, Jiangsu, China 2Faculty of Agriculture, University of Khartoum, Khartoum, Sudan DOI 10.7717/peerj.17590 Academic Editor Anshuman Singh Subject Areas Agricultural Science, Bioinformatics,...
Genome-wide identification, characterization and expression analysis of the DUF668 gene family in tomato
Genome-wide identification, characterization and expression analysis of the DUF668 gene family in tomato Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biosciences and Biotechnology, Shenyang Agriculture University, Shenyang, China DOI 10.7717/peerj.17537 Academic Editor Jiban Shrestha Subject Areas Agricultural Science, Bioinformatics, Molecular Biology, Plant Science Keywords Tomato, Genome-wide analysis, DUF668 gene family, Adverse stress, Gene expression...
Genomic insights into CKX genes: key players in cotton fibre development and abiotic stress responses
Genomic insights into CKX genes: key players in cotton fibre development and abiotic stress responses 1Department of Plant Breeding, Cotton Research Institute of Iran (CRII), Agricultural Research, Education and Extension Organization (AREEO), Gorgan, Golestan, Iran 2Centre for Plant Biotechnology and Molecular Biology, Kerala Agricultural University, Thrissur, Kerala, India 3Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research,...
Genome-wide identification and characterization of SPXdomain-containing genes family in eggplant
Genome-wide identification and characterization of SPXdomain-containing genes family in eggplant 1College of Horticulture Science and Engineering, Shandong Agricultural University, Tai an, China 2Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Huanghuai Region), Ministry of Agriculture and Rural Affairs, Shandong Agricultural University, Tai an, China 3Shandong Collaborative Innovation Center for Fruit and Vegetable Production With High Quality and Efficiency,...
Genome-wide identification and characterization of the AP2/ERF gene family in loblolly pine (Pinus taeda L.)
Genome-wide identification and characterization of the AP2/ERF gene family in loblolly pine (Pinus taeda L.) 1Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, South China Agricultural University, Guangzhou, Guangdong, China 2Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou, Guangdong, China DOI 10.7717/peerj.17388 Academic Editor Nicholas Jeffery Subject Areas Bioinformatics,...
Identification and characterization of the CRK gene family in the wheat genome and analysis of their expression profile in response to high temperature-induced male sterility
Hongzhan Liu conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft. Xiaoyi Li performed the experiments, prepared figures and/or tables, and approved the final draft. Zehui Yin performed the experiments, prepared figures and/or tables, and approved the final draft. Junmin Hu analyzed the data, prepared figures and/or tables, and approved the final draft.
Genome-wide analysis of bZIP transcription factors and their expression patterns in response to methyl jasmonate and low-temperature stresses in Platycodon grandiflorus
Genome-wide analysis of bZIP transcription factors and their expression patterns in response to methyl jasmonate and low-temperature stresses in Platycodon grandiflorus 1College of Pharmacy, Anhui University of Chinese Medicine, Hefei, Anhui, China 2Institute of Health and Medicine, Hefei Comprehensive National Science Center, Joint Research Center for Chinese Herbal Medicine of Anhui, Bozhou, Anhui, China 3College of Pharmacy, Bozhou Vocational and Technical College, Bozhou, Anhui, China...
Genome-wide identification and analysis of ascorbate peroxidase (APX) gene family in hemp (Cannabis sativa L.) under various abiotic stresses
Genome-wide identification and analysis of ascorbate peroxidase (APX) gene family in hemp (Cannabis sativa L.) under various abiotic stresses 1College of Life Sciences and Agroforestry, Qiqihar University, Qiqihar City, Heilongjiang Province, China 2Key Laboratory of Resistance Genetic Engineering and Cold Biodiversity Conservation, Qiqihar University, Qiqihar City, Heilongjiang Province, China DOI 10.7717/peerj.17249 Academic Editor Ahmet Tansel Serim Subject Areas Bioinformatics, Genetics,...
Genome-wide identification and characterization of FAD family genes in barley
Genome-wide identification and characterization of FAD family genes in barley 1College of Life Science, Hebei Normal University, Hebei, China 2Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China DOI 10.7717/peerj.16812 Academic Editor Elsayed Mansour Subject Areas Agricultural Science, Bioinformatics, Molecular Biology, Plant Science Keywords FAD, Barley, Gene family, Gene expression, Subcellular localization Copyright © Licence This is an open...
Genome-wide identification and expression analysis of the MADS gene family in sweet orange (Citrus sinensis) infested with pathogenic bacteria
Genome-wide identification and expression analysis of the MADS gene family in sweet orange (Citrus sinensis) infested with pathogenic bacteria 1Southwest Forestry University, Kunming, China 2Institute of Tropical and Subtropical Economic Crops, Institute of Tropical and Subtropical Economic Crops, Yunnan Academy of Agricultural Sciences, Ruili, China DOI 10.7717/peerj.17001 Academic Editor Diaa Abd El-Moneim Subject Areas Bioinformatics, Genomics, Microbiology, Plant Science Keywords Sweet...
Color components determination and full-length comparative transcriptomic analyses reveal the potential mechanism of carotenoid synthesis during Paphiopedilum armeniacum flowering
Yiwei Bai conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft. Jiping Ma conceived and designed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft. Yanjun Ma conceived and designed the experiments, prepared figures and/or tables, and approved the final draft.
Genome-wide identification of the MADS-box gene family in Avena sativa and its role in photoperiod-insensitive oat
Genome-wide identification of the MADS-box gene family in Avena sativa and its role in photoperiod-insensitive oat 1Inner Mongolia Agricultural University, Key Lab of Germplasm Innovation and Utlization of Triticeae Crop at Universities of Inner Mongolia Autonomous Region, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China 2Inner Mongolia Academy of Agriculture and Animal Husbandry Science, Hohhot, Inner Mongolia, China 3Zhangjiakou Academy of Agricultural Sciences,...
Transcriptome analysis of green and purple fruited pepper provides insight into novel regulatory genes in anthocyanin biosynthesis
In this study, four pepper varieties (HN191, HN192, HN005, and EJT) were selected as research materials. The unripe fruits of HN191, HN192, and HN005 have a purple color at 10, 20, and 30 days after anthesis (DAA), while the unripe fruits of EJT are green (Fig. 1). However, all four varieties have red ripe fruits at 60 DAA.
Genome-wide identification of the bHLH transcription factor family in Rosa persica and response to low-temperature stress
Genome-wide identification of the bHLH transcription factor family in Rosa persica and response to low-temperature stress 1Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University,...
Genome-wide identification and expression analysis of growth-regulating factors in Dendrobium officinale and Dendrobium chrysotoxum
Shuying Zhu performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft. Hongman Wang conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft. Qiqian Xue performed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft.
Genome-wide identification of 2-oxoglutarate and Fe (II)-dependent dioxygenase family genes and their expression profiling under drought and salt stress in potato
Firstly, the proteome of S. tuberosum was retrieved from Spud DB (http://spuddb.uga.edu) DM1-3 v6.1 (Pham et al., 2017). Reference sequences of 2ODDs of S. lycopersicum, S. chacoense, S. melongena, Manihot esculenta, Capsicum annuum, Arabidopsis thaliana, and Nicotiana tabacum were downloaded from the National Centre for Biotechnology Institute (NCBI) protein database, which are shown in Table S1.
Genome-wide analysis of sugar transporter genes in maize (Zea mays L.): identification, characterization and their expression profiles during kernel development
Nan Sun conceived and designed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft. Yanfeng Liu conceived and designed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft. Tao Xu performed the experiments, prepared figures and/or tables, and approved the final draft. Xiaoyan Zhou performed the experiments, prepared figures and/or tables, and approved the final draft.
Comprehensive genomic characterisation of the NAC transcription factor family and its response to drought stress in Eucommia ulmoides
Comprehensive genomic characterisation of the NAC transcription factor family and its response to drought stress in Eucommia ulmoides 1Laboratory of Forestry Department, Agricultural College, Shihezi University, Shihezi, China 2Lveyang County Forest Tree Seedling Workstation, Forestry Bureau of Lveyang County, Lveyang, China 3Laboratory of Plant Protection Department, Agricultural College, Shihezi University, Shihezi, China DOI 10.7717/peerj.16298 Academic Editor Imren Kutlu Subject Areas...
Genome-wide identification and analysis of Lateral Organ Boundaries Domain (LBD) transcription factor gene family in melon (Cucumis melo L.)
Genome-wide identification and analysis of Lateral Organ Boundaries Domain (LBD) transcription factor gene family in melon (Cucumis melo L.) Department of Field Crops, Food and Agriculture Vocational High School, Cankiri Karatekin University, Cankiri, Turkey DOI 10.7717/peerj.16020 Academic Editor Rogerio Sotelo-Mundo Subject Areas Agricultural Science, Bioinformatics, Biotechnology, Molecular Biology, Plant Science Keywords Cucumis melo, LBD transcription factor, Gene expression, Evolution...
Genome-wide identification of DUF506 gene family in Oryza sativa and expression profiling under abiotic stresses
Genome-wide identification of DUF506 gene family in Oryza sativa and expression profiling under abiotic stresses 1Yunnan Academy of Agricultural Sciences, Food Crops Research Institute, Kunming, China 2Yunnan Grain Industry Group Co., Ltd, Kunming, China DOI 10.7717/peerj.16168 Academic Editor Elsayed Mansour Subject Areas Agricultural Science, Bioinformatics, Genetics, Genomics, Plant Science Keywords DUF506, Gene family, Identification, Abiotic stress, Expression profile Copyright © Licence...
Comparative analysis of codon usage patterns and phylogenetic implications of five mitochondrial genomes of the genus Japanagallia Ishihara, 1955 (Hemiptera, Cicadellidae, Megophthalminae)
Min Li conceived and designed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft. Jiajia Wang performed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft. Renhuai Dai conceived and designed the experiments, performed the experiments, authored or reviewed drafts of the article, and approved the final draft.
Whole-genome resequencing analysis of the medicinal plant Gardenia jasminoides
Whole-genome resequencing analysis of the medicinal plant Gardenia jasminoides 1Fujian Academy of Forestry Sciences, Fuzhou, Fujian, China 2College of Landscape and Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China DOI 10.7717/peerj.16056 Academic Editor Jonathan Thomas Subject Areas Agricultural Science, Bioinformatics, Developmental Biology, Genomics, Plant Science Keywords Gardenia jasminoides, Whole genome-resequencing, SNP, InDel, SV, CNV, Crocin, Geniposide...
Wheat gibberellin oxidase genes and their functions in regulating tillering
Wheat gibberellin oxidase genes and their functions in regulating tillering 1Henan Technology Innovation Centre of Wheat/National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, Henan, China 2Henan Engineering Research Center of Wheat Spring Freeze Injury Identification, Shangqiu Academy of Agricultural and Forestry Sciences, Shangqiu, Henan, China, Shangqiu, China DOI 10.7717/peerj.15924 Academic Editor Mirza Hasanuzzaman Subject Areas Agricultural...
Comparative analysis of flavonoids, polyphenols and volatiles in roots, stems and leaves of five mangroves
Data analysis The mass spectral fragmentation patterns of the compounds detected by GC-MS were compared with those in the NIST 2014, Wiley (version 9) libraries. Those with a mass spectral similarity of over 90% were selected for identification. The relative content (%) of each compound was calculated by comparing the peak area, expressed as % from total peak areas, in GC-MS analysis.
Comprehensive identification and expression analysis of CAMTA gene family in Phyllostachys edulis under abiotic stress
Expression profiles of the PeCAMTA genes during abiotic stress To investigate the expression of PeCAMTAs during abiotic stress, we analyzed the expression of 11 PeCAMTAs under three abiotic stresses using qRT-PCR: polyethylene glycol (PEG), heat, and cold treatment. The expression patterns of PeCAMTAs responded differently to the three abiotic stresses, and some PeCAMTAs were either significantly induced or repressed.
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