van Noort
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Articles by van Noort
AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies
Accurate prediction of enzyme optimal catalytic temperature (Topt) is important for enzyme applications, particularly for identifying biocatalysts stable in extreme conditions, but experimental measurement remains costly and time-consuming. Here, we present AdventML, a machine learning framework for (Topt) prediction that expands the available models, evaluates protein representations and model architectures, and compares resampling strategies for improving performance at extremes.
Inspectorch: Efficient rare event exploration in solar observations
[Submitted on 23 Feb 2026] Title:Inspectorch: Efficient rare event exploration in solar observations View a PDF of the paper titled Inspectorch: Efficient rare event exploration in solar observations, by C. J. D\'iaz Baso and 4 other authors View PDF HTML (experimental) Abstract:The Sun is observed in unprecedented detail, enabling studies of its activity on very small spatiotemporal scales.
Preclinical Serial Shear Stress Analysis of a Novel Strut-free Fibrillated Bioresorbable Polymeric Endoluminal Graft
ORIGINAL RESEARCH article Front. Cardiovasc. Med. Sec.
Magnetic properties of orphan penumbrae
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä This publication is imported from Aalto University research portal. View publication in the Research portal (opens in new window) View/Open full text file from the Research portal (opens in new window) Astronomy and Astrophysics, Volume 701, pp. 1-11 Publisher Copyright: © The Authors 2025.
SCARAP: scalable cross-species comparative genomics of prokaryotes
Much of prokaryotic comparative genomics currently relies on two critical computational tasks: pangenome inference and core genome inference. Pangenome inference involves clustering genes from a set of genomes into gene families, enabling genome-wide association studies and evolutionary history analysis. The core genome represents gene families present in nearly all genomes and is required to infer a high-quality phylogeny.
HADDOCK3 - modular integrative modelling software
Published December 2, 2024 | Version 2024.12.0b7 Software Open Teixeira, Joao1 Honorato, Rodrigo2 Giulini, Marco3 Bonvin, Alexandre2 Alidoost, Sarah4 Reys, Victor5 Jimenez, Brian6 Schulte, Douwe2 van Noort, Charlotte3 Verhoeven, Stefan7 Vreede, Barbara SSchott Tsai, Regen 1. Zymvol 2. @UtrechtUniversity 3. Utrecht University 4. Netherlands eScience center 5. @haddocking 6. @zymvol 7.
Internet-Based Prevention of Re-Victimization for Youth with Care Experience (EMPOWER-YOUTH): Results of a Randomized Controlled Trial
All articles published by MDPI are made immediately available worldwide under an open access license. No special permission is required to reuse all or part of the article published by MDPI, including figures and tables. For articles published under an open access Creative Common CC BY license, any part of the article may be reused without permission provided that the original article is clearly cited. For more information, please refer to https://www.mdpi.com/openaccess.
RDF Surfaces: Enabling Classical Negation on the Semantic Web
[Submitted on 15 Jun 2024] Title:RDF Surfaces: Enabling Classical Negation on the Semantic Web View a PDF of the paper titled RDF Surfaces: Enabling Classical Negation on the Semantic Web, by Patrick Hochstenbach and 7 other authors View PDF HTML (experimental) Abstract:The Resource Description Framework (RDF) is a fundamental technology in the Semantic Web, enabling the representation and interchange of structured data.
FLAMS: Find lysine acylations and other modification sites
Today, hundreds of post-translational modification (PTM) sites are routinely identified at once, but the comparison of new experimental datasets to already existing ones is hampered by the current inability to search most PTM databases at the protein residue level.
3D printed fluidic swab for COVID-19 testing with improved diagnostic yield and user comfort - Nano Convergence
100% glycerol, trypsin, tris(2-carboxyethyl)phosphine hydrochloride (TCEP), and ethylenediaminetetraacetic acid (EDTA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Navy-blue dye was purchased from Chefmaster (Fullerton, CA, USA). Phosphate buffered saline (PBS, pH 7.4) was purchased from Gibco (Grand Island, NY, USA). CS were purchased from Soosung (Yangsan, Korea). NW solution (0.9% NaCl) was purchased from Medicore (Pocheon, Korea).
3D ultrasound strain imaging of puborectal muscle with and without unilateral avulsion
International Urogynecology Journal, Apr 2023 This is a preview of a remote PDF: https://link.springer.com/content/pdf/10.1007/s00192-023-05498-1.pdf Das, Shreya, Hendriks, Gijs A. G. M., van den Noort, Frieda, Manzini, Claudia, van der Vaart, C. H., de Korte, Chris L.. , International Urogynecology Journal, 2023, pp. 1-9, DOI: 10.1007/s00192-023-05498-1
Estimated cumulative radiation exposure in patients treated for adolescent idiopathic scoliosis
European Spine Journal, Mar 2023 This is a preview of a remote PDF: https://link.springer.com/content/pdf/10.1007/s00586-023-07651-2.pdf Cool, J., Streekstra, G. J., van Schuppen, J., Stadhouder, A., van den Noort, J. C., van Royen, B. J.. , European Spine Journal, 2023, pp. 1-10, DOI: 10.1007/s00586-023-07651-2
Now you see me, now you don’t: verifying the absence of alien invasive yellow crazy ant Anoplolepis gracilipes in South Africa
Abusisiwe Ndaba1*, Thinandavha C. Munyai2, Nokuthula Mbanyana3, Simon van Noort3 and Charlene Janion-Scheepers1 1University of Cape Town, South Africa 2School of Life Sciences, University of KwaZulu-Natal, South Africa 3Iziko Museums of South Africa, South Africa The final, formatted version of the article will be published soon. Receive an email when it is updated Anoplolepis gracilipes is an invasive species that is a major threat to native ecosystems worldwide.
Frontiers | How to use participatory design to develop an eHealth intervention to reduce preprocedural stress and anxiety among children visiting the hospital: The Hospital Hero app multi-study and pilot report
Charlotte C. Poot1, 2*, Eline Meijer1, 2, Annet Bruil3, Melanie Venema4, Niko J. Vegt1, 2, 5, Nicole Donkel4, Veronique van Noort4, Niels H. Chavannes1, 2 and Arno A.
Genomic diversity and metabolic potential of marine Pseudomonadaceae
Léa Girard1*, Cédric Lood1, 2, René De Mot1, Vera Van Noort1, 3 and Julia Baudart4 1Centre of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, Faculty of Bioscience Engineering, KU Leuven, Belgium 2Department of Biosystems, Faculty of Bioscience Engineering, KU Leuven, Belgium 3Institute of Biology, Faculty of Mathematics and Natural Sciences, Leiden University, Netherlands 4USR3579 Laboratoire de biodiversité et biotechnologies microbiennes (LBBM), France...
Combination of pre-adapted bacteriophage therapy and antibiotics for treatment of fracture-related infection due to pandrug-resistant Klebsiella pneumoniae | Nature Communications
Abstract A 30-year-old bombing victim with a fracture-related pandrug-resistant Klebsiella pneumoniae infection after long-term (>700 days) antibiotic therapy is treated with a pre-adapted bacteriophage along with meropenem and colistin, followed by ceftazidime/avibactam. This salvage therapy results in objective clinical, microbiological and radiological improvement of the patient’s wounds and overall condition.
American Voters Do Punish Overt Undemocratic Behavior at the Polls: Natural Experimental Evidence from the 2021 Insurrection of the U.S. Capitol
36 Pages Posted: 28 Sep 2021 Last revised: 29 Nov 2021 Date Written: September 25, 2021 Abstract Existing research suggests that overt undemocratic behavior by elected officials is insufficiently punished by American voters to electorally discourage democratic backsliding. Evidence for this proposition comes primarily from hypothetical survey experiments with relatively weak treatments.
Collective narcissism as a framework for understanding populism
Abstract Research on national collective narcissism, the belief and resentment that a nation's exceptionality is not sufficiently recognized by others, provides a theoretical framework for understanding the psychological motivations behind the support for right‐wing populism. It bridges the findings regarding the economic and sociocultural conditions implicated in the rise of right‐wing populism and the findings regarding leadership processes necessary for it to find its political expression.
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
Metagenomes, and especially viral metagenomes, are often characterized by a majority of unknown sequences that have no homologues in the database21. Assembly of the short, second generation sequencing reads into longer contigs may facilitate their annotation and interpretation.
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