Yuen Chiu on Muck Rack

Yuen Chiu

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Articles

Deep learning models for predicting RNA degradation via dual crowdsourcing - Nature Machine Intelligence

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By Hannah K. Wayment-Steele, Walter Reade, Gilles Vandewiele, Michele Tinti, Mohamed Fares, Eterna Participants, Jonathan Romano, Jiayang Gao, Kazuki Fujikawa, Hanfei Mao, Yuen Chiu
| Nature Verified
Initial feature generation As a starting point for Kaggle teams, we supplied a collection of features for each RNA sequence, including the minimum free energy (MFE) structure according to the ViennaRNA 2 energy model23, ‘loop type’, or secondary structure type assignments generated with bpRNA24 (S = Stem, I = Internal loop, B = Bulge, H = Hairpin, M = Multiloop, X = external loop, E = end, terminology adopted from bpRNA) and the base-pair probability matrix according to the EternaFold22...
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