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Articles

Chromosome-level haplotype-resolved assembly of highly heterozygous grass genomes with PhaseGrass - Nature Communications

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By Yutang Chen, Dario Copetti, Martin Mascher, Axel Himmelbach, Nils Stein, Roland Kölliker
| Nature Verified
Abstract Current methods to generate haplotype-resolved assemblies for highly heterozygous genomes suffer from reference bias when relying on reference-based phasing or may generate imbalanced haplomes when relying on graph-based phasing. Here, we report PhaseGrass, an assembly, phasing and scaffolding workflow that is compatible with accurate or error-prone long reads, generating haplotype-resolved assemblies for highly heterozygous genomes.
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Author Correction: A pangenome and pantranscriptome of hexaploid oat - Nature

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By Raz Avni, Nadia Issabella Kamal, Eric Jellen, Wubishet A. Bekele, Petri Auvinen, Brian Boyle Verified, Francisco Canales, Craig Carlson, Brett Chapman, Yutang Chen, Viet A. Dang, Steven R Eichten, Amit Fenn, Anne Fiebig, Yong-Bi Fu, Heidrun Gundlach, Rajeev Gupta Verified, Georg Haberer, Matthias Herrmann, Axel Himmelbach, Catherine Howarth, Haifei Hu, Asuka Itaya, Jean-Luc Jannink, Yong Jia, Thomas Lux, Sofia Marmon, Raja Sekhar Nandety, Asher Pasha, Nicholas Provart, Jaswinder Singh, Mehtab Karan Singh, Nick Sirijovski, Nils Stein, Sean Walkowiak, Penghao Wang, Charlene P. Wight, Nicholas A. Tinker, Jason Fiedler, Peter Maughan, Manuel Spannagl
| Nature Verified
Correction to: Nature https://doi.org/10.1038/s41586-025-09676-7 Published online 29 October 2025 In the version of the article initially published, the wrong caption was included for Extended Data Fig. 10. The correct caption is now available in the HTML and PDF versions of the article, and the original, incorrect caption is available for comparison in the Supplementary information accompanying this notice. Supplementary information is available in the online version of this amendment.
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A pangenome and pantranscriptome of hexaploid oat - Nature

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By Raz Avni, Nadia Issabella Kamal, Eric Jellen, Wubishet A. Bekele, Petri Auvinen, Brian Boyle Verified, Francisco Canales, Craig Carlson, Brett Chapman, Yutang Chen, Viet A. Dang, Steven R Eichten, Amit Fenn, Anne Fiebig, Yong-Bi Fu, Heidrun Gundlach, Rajeev Gupta Verified, Georg Haberer, Matthias Herrmann, Axel Himmelbach, Catherine Howarth, Haifei Hu, Asuka Itaya, Jean-Luc Jannink, Yong Jia, Thomas Lux, Raja Sekhar Nandety, Asher Pasha, Nicholas Provart, Jaswinder Singh, Mehtab Karan Singh, Nick Sirijovski, Nils Stein, Sean Walkowiak, Penghao Wang, Charlene P. Wight, Nicholas A. Tinker, Jason Fiedler, Peter Maughan, Manuel Spannagl, Sofia Marmon
| Nature Verified
Abstract Oat grain is a traditional human food that is rich in dietary fibre and contributes to improved human health1,2. Interest in the crop has surged in recent years owing to its use as the basis for plant-based milk analogues3. Oat is an allohexaploid with a large, repeat-rich genome that was shaped by subgenome exchanges over evolutionary timescales4.
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