Catrina Spruce on Muck Rack

Catrina Spruce

As seen in: Genome Biology
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Articles

Enhlink infers distal and context-specific enhancer–promoter linkages - Genome Biology

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By Olivier Poirion, Wulin Zuo, Catrina Spruce, Candice Baker, Sandra Daigle, Ashley Olson, Daniel A Skelly, Elissa J. Chesler, Christopher Baker, Brian White
| Genome Biology
We downloaded the Human Heart snATAC-seq dataset from the portal (http://ns104190.ip-147-135-44.us/CARE_portal/ATAC_data_and_download.html) described in the publication [21]. From the portal, we downloaded the matrix file (all.npz), the cell index file (all.index), the OCR features index file (all.merged.ygi), the genome reference (Homo_sapiens.GRCh38.99.TSS.2 K.bed), the cluster file (all.cluster), and the all.group file with the library ID of each cell.
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Enhlink infers distal and context-specific enhancer-promoter linkages

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By Olivier Poirion, Sandra Daigle, Wulin Zuo, Catrina Spruce
| biorxiv.org
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