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Christian Barnabé on Muck Rack

Christian Barnabé

As seen in: ScienceDirect, BioRxiv
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Articles

mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms

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By Christian Barnabé, Guilhem Sempere, Vincent Manzanilla, Joel Moo Millan
| BioRxiv
Abstract We developed a python package called mbctools, designed to offer a cross-platform tool for processing amplicon data from various organisms in the context of metabarcoding studies. It can handle the most common tasks in metabarcoding pipelines such as paired-end merging, primer trimming, quality filtering, sequence denoising, zero-radius operational taxonomic unit (ZOTU) filtering, and has the capability to process multiple genetic markers simultaneously.
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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms

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By Christian Barnabé, Guilhem Sempere, Vincent Manzanilla, Joel Moo Millan
| BioRxiv
Abstract We developed a python package called mbctools, designed to offer a cross-platform tool for processing amplicon data from various organisms in the context of metabarcoding studies. It can handle the most common tasks in metabarcoding pipelines like paired-end merging, primer trimming, quality filtering, zero-radius operational taxonomic units (ZOTU) denoising and filtering. This pipeline has the capability to process multiple genetic markers simultaneously.
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Infection, Genetics and Evolution

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By Melany Calderon-Osorno, ... Francisco Duarte-Martínez, Juliana Lopez-Jimenez, Christian Barnabé
| ScienceDirect Verified
YearTotal publishedSubscriptionOpen access 2018 376 362 14 2019 383 356 27 2020 403 367 36 2021 414 306 108 2022 189 0 189 Infection, Genetics and Evolution welcomes articles dealing with genetics, population genetics, genomics, gene expression, population dynamics, mathematical modeling, bioinformatics, and any related area that contributes to improve our understanding of the genetics and evolutionary biology of hosts, pathogens and vectors, as well as coevolution processes among them in...
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