Highlights • Facile synthesis of structurally complex, reactive peptide methylfluorophosphonates • Diverse functional group tolerance without protecting groups • Mechanistic studies support the intermediacy of a difluorophosphonate • Specific inactivation of the nocardicin biosynthetic thioesterase exemplified Summary Diphenylphosphonates (DPPs) have been used for 50 years to inactivate serine hydrolases, creating adducts representative of tetrahedral intermediates of this important class of...