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Daniel S. Himmelstein on Muck Rack

Daniel S. Himmelstein

New Hampshire
As seen in: National Institutes of Health, Genome Biology, BioRxiv
Founding @radoverlay · Digital craftsman of the biodata revolution · Open sourcerer · Tamer of #hetnets
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Articles

Winners of the Closeread Prize - Data-Driven Scrollytelling with Quarto

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By Matthias Schnetzer, Trang Le, Joshua D. Himmelstein, Daniel S. Himmelstein
| posit.co
Andrew Bray James Goldie Curtis Kephart Three months ago we announced The Closeread Prize, a fun and friendly competition to see who could create the finest scrollytelling story. The only requirement was that the story use Closeread, an extension for Quarto that allows you to author web stories that unfold as the user scrolls through. It’s a powerful scrollytelling technique that takes care and craft to use effectively. The range of entries that we received was stunning.
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biopragmatics/bioversions: v0.7.3

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By Charles Tapley Hoyt, James Stevenson, Benjamin M. Gyori, Daniel S. Himmelstein
| zenodo.org
Published January 28, 2025 | Version v0.7.3 Software Open What's Changed Fix error handling and failure output by @cthoyt in https://github.com/biopragmatics/bioversions/pull/72 Update cruft and mypy by @cthoyt in https://github.com/biopragmatics/bioversions/pull/73 Add getter for SILVA by @jplfaria in https://github.com/biopragmatics/bioversions/pull/69 Full Changelog: https://github.com/biopragmatics/bioversions/compare/v0.7.2...v0.7.3 Name Size md5:a44f73a14652f5cc949d99b4728bed19 294.0 kB...
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Hetnet connectivity search provides rapid insights into how two biomedical entities are related

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By Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster
| BioRxiv
New Results doi: https://doi.org/10.1101/2023.01.05.522941 Abstract Hetnets, short for "heterogeneous networks", contain multiple node and relationship types and offer a way to encode biomedical knowledge. One such example, Hetionet connects 11 types of nodes - including genes, diseases, drugs, pathways, and anatomical structures - with over 2 million edges of 24 types.
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