Donovan H. Parks on Muck Rack

Donovan H. Parks

Canada, Halifax
As seen in: Nature, Science Magazine
bioinformatic consultant | information visualization | machine learning | generative art
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Articles

Author Correction: CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning - Nature Methods

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By Donovan H. Parks, Ben J. Woodcroft
| Nature Verified
Correction to: Nature Methods https://doi.org/10.1038/s41592-023-01940-w, published online 27 July 2023. In the version of the article initially published, the color key in Fig. 5 was incorrect and has been amended so that blue represents CheckM2 and orange represents CheckM1. This has been corrected in the HTML and PDF versions of the article. About this article Chklovski, A., Parks, D.H., Woodcroft, B.J. et al.
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Author Correction: Greengenes2 unifies microbial data in a single reference tree - Nature Biotechnology

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By Qiyun Zhu, Donovan H. Parks, Mads Albertsen, Philip Hugenholtz, Andrew Bartko, Aki S Havulinna, Veikko Salomaa, Siavash Mirarab
| Nature Verified
Correction to: Nature Biotechnology https://doi.org/10.1038/s41587-023-01845-1, published online 27 July 2023. In the version of the article initially published, a portion of the Competing interests statement was missing: “R.K. is a scientific advisory board member, and consultant for BiomeSense, Inc., has equity and receives income.
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Greengenes2 unifies microbial data in a single reference tree - Nature Biotechnology

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By Qiyun Zhu, Donovan H. Parks, Mads Albertsen, Philip Hugenholtz, Andrew Bartko, Aki S Havulinna, Veikko Salomaa, Siavash Mirarab
| Nature Verified
Abstract Studies using 16S rRNA and shotgun metagenomics typically yield different results, usually attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that unifies genomic and 16S rRNA databases in a consistent, integrated resource.
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