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Cooperative clamp-mediated promoter recognition by poxviral RNA polymerase and its TBP/TFIIB-like partner - Nature Communications
Abstract The recruitment of RNA polymerase to gene promoters is a critical step in gene expression. For RNA polymerase II, this process is initiated by TBP and TFIIB, with homologs of these TBP/TFIIB pairs found in all known multi-subunit RNA polymerase systems. Here, we describe a mode of promoter recognition by the poxviral intermediate transcription factor 3, VITF-3.
Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes
Adams P.D. Afonine P.V. Bunkóczi G. Chen V.B. Davis I.W. Echols N. Headd J.J. Hung L.-W. Kapral G.J. Grosse-Kunstleve R.W. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010; 66: 213-221 Ahn B.Y. Gershon P.D. Jones E.V. Moss B. Identification of rpo30, a vaccinia virus RNA polymerase gene with structural similarity to a eucaryotic transcription elongation factor. Mol. Cell. Biol.
Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes
Highlights • Structures of Vaccinia RNA polymerase during transcription and cap formation • Capping enzyme contains mobile modules that bind to the polymerase and transcript • Comparison with complete vRNAP suggests large rearrangements during initiation • The Vaccinia-specific Rap94 resembles TFIIB and is displaced by nucleic acids Summary Poxviruses use virus-encoded multisubunit RNA polymerases (vRNAPs) and RNA-processing factors to generate m 7G-capped mRNAs in the host cytoplasm.
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