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Compilation and utilization of a sorghum transcriptome compendium for gene regulatory network analysis and crop trait engineering
INTRODUCTION Sorghum bicolor (sorghum) is a drought and heat-tolerant C4 grass used to produce grain, forage, and biomass on approximately 50 m ha worldwide, serving as a subsistence crop in some regions of the semiarid tropics. The species has a large and diverse germplasm collection (approximately 57 000 accessions) (https://www.grin-global.org/) that largely originates from the diverse eco-regions of Africa, sorghum's center of origin.
The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
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Keywords sugarcane Saccharum polyploid repeated k-mers genome ancestry domestication admixture unknown ancestor chloroplast phylogeny transposable elements Introduction Interspecific hybridization and polyploidization are major evolutionary forces in plants. They complicate the reconstruction of phylogenetic relationships between taxa, especially in higher-order polyploids. Reference genome assemblies and resequencing data have greatly helped unravel those relationships.
By Olivier Garsmeur, Simon Rio, Anna Lipzen, Catherine Hervouet, Theo Durand, Chris Daum, Yuko Yoshinaga, Mike Butterfield, Alexander Sanchez, Alexánder Sánchez, Noa Kekuewa Lincoln, Anna L. Hale, Jean Yves Hoarau, Yoshifumi Terajima, Prakash Lakshmanan, Erik J. Sacks, Shailendra Kumar Sharma, Kerrie Barry, Jeremy Schmutz, Angélique D’Hont, Nicolas Pompidor, George Piperidis, Marotea Vitrac
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Cell Press
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A haplotype-resolved reference genome for Eucalyptus grandis
Abstract E. grandis is a hardwood tree used worldwide as pure species or hybrid partner to breed fast-growing plantation forestry crops that serve as feedstocks of timber and lignocellulosic biomass for pulp, paper, biomaterials and biorefinery products. The current v2.0 genome reference for the species (Bartholome et al., 2015; Myburg et al., 2014) served as the first reference for the genus and has helped drive the development of molecular breeding tools for eucalypts.
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