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Martin Bartas

As seen in: Nature, Wiley Online Library, MDPI, BioRxiv, The Journal of Biological Chemistry
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Articles

Metapneumovirus genomes harbor a non-random layer of reverse ORFs

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By Martin Bartas, Adriana Volná
| Nature Verified
Abstract Metapneumoviruses (MPVs) are negative-sense RNA viruses associated with recurrent respiratory disease outbreaks, yet their full coding potential remains incompletely characterized. We performed a genome-scale survey of reverse open reading frames (rORFs) located on the negative-sense genomic RNA across human metapneumovirus (HMPV) and related MPV genomes, benchmarking against codon-aware and composition-preserving null models.
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CpX Hunter web tool allows high-throughput identification of CpG, CpA, CpT, and CpC islands: A case study in Drosophila genome

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By Martin Bartas
| The Journal of Biological Chemistry Verified
Keywords CpG islands CpA islands CpT islands Genome analyses Dinucleotide Web server Drosophila Introduction CpG islands are regions within nucleic acids characterized by a high frequency of CpG dinucleotides, which are prone to methylation (1). The likelihood of CpG methylation is influenced by several factors, including the genomic context, the presence of specific DNA-binding proteins, and the activity of DNA methyltransferases (2, 3).
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Nitrogen Deficiency Accelerates Rice Leaf Senescence Through ABA Signaling and Sugar Metabolic Shifts

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By Xianyue Guan, Yan Zhang, Lujian Zhou, Martin Bartas
| Wiley Online Library Verified
CONFLICT OF INTEREST STATEMENT The author declares no conflict of interest. Supporting Information Filename Description ppl70124-sup-0001-supinfo.pdfPDF document, 2.2 MB Data S1: Supporting Information. REFERENCES , , 2010. Induction of leaf senescence by low nitrogen nutrition in sunflower (Helianthus annuus) plants. Physiol Plantarum 138: 256–267. , , , , , 2019.
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