Skip To Main Content
Mohammadsaleh Refahi on Muck Rack

Mohammadsaleh Refahi

As seen in: Nature, BioRxiv, PeerJ
Is this you? As a journalist, you can create a free Muck Rack account to customize your profile, list your contact preferences, and upload a portfolio of your best work. Claim your profile

Get in touch with Mohammadsaleh

Contact Mohammadsaleh, search articles and posts on X, monitor coverage, and track replies from one place.

Learn more about Muck Rack

Actions

Share this page

Is this you?

As a journalist, you can create a free Muck Rack account to customize your profile, list your contact preferences, and upload a portfolio of your best work.
Claim your profile

Articles

Normalized compression distance for DNA classification

|
By Mohammadsaleh Refahi, Haozhe Neil Duan, James Brown, Ali TE
| PeerJ
Normalized compression distance for DNA classification Department of Electrical Engineering, Drexel University, Philadelphia, PA, United States of America DOI 10.7717/peerj.20677 Academic Editor Nicole Nogoy Subject Areas Bioinformatics, Computational Biology, Genomics, Computational Science Keywords Compression distance, Genomic sequence analysis, Genomic classification, Alignment-free methods, Bioinformatics, Metagenomics, Gzip compression Copyright © Licence This is an open access article...
Open in Who Shared Issue with article?

iSeqSearch: incremental protein search for iBlast/iMMSeqs2/iDiamond

|
By Hyunwoo Yoo, Mohammadsaleh Refahi, Robi Polikar, Bahrad A. Sokhansanj
| PeerJ
iSeqSearch: incremental protein search for iBlast/iMMSeqs2/iDiamond 1Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, United States of America 2Electrical and Computer Engineering, Rowan University, Glassboro, NJ, United States of America DOI 10.7717/peerj.19171 Academic Editor Liang Wang Subject Areas Bioinformatics, Genomics Keywords Incremental Search, Sequence Alignment, Protein sequence analysis, Bioinformatics tools, Protein database search,...
Open in Who Shared Issue with article?

Enhancing nucleotide sequence representations in genomic analysis with contrastive optimization - Communications Biology

|
By Mohammadsaleh Refahi, Bahrad A. Sokhansanj, James Brown, Hyunwoo Yoo
| Nature Verified
Abstract Analysis of genomic and metagenomic sequences is inherently more challenging than that of amino acid sequences due to the higher divergence among evolutionarily related nucleotide sequences, variable k-mer and codon usage within and among genomes of diverse species, and poorly understood selective constraints.
Open in Who Shared Issue with article?
See all 5 articles