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Okinawa Inst

As seen in: Wiley Online Library, BioRxiv
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Articles

Beyond the Active Site: The addition of a remote loop reveals a new complex biological function for chitinase enzymes.

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By Adnan Sljoka, Paola Laurino, Okinawa Inst, Dan Kozome
| BioRxiv
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wallace 2: a shiny app for modeling species niches and distributions redesigned to facilitate expansion via module contributions

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By Jamie M. Kass, Okinawa Inst, City Univ, Gonzalo E. Pinilla-Buitrago
| Wiley Online Library Verified
Managing multiple species in a single session We restructured the application to allow users to manage multiple species in the same wallace session. While the analysis unit in wallace releases prior to ver. 2 was data from a single species, it is now a list of species that allows for batch processing. wallace 2 still exclusively makes single-species ENMs (i.e., not joint models).
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Identification of residue inversions in large phylogenies of duplicated proteins

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By Stefano Pascarelli, Paola Laurino, Okinawa Inst, Tech. Graduate Univ
| BioRxiv
Abstract Connecting protein sequence to function is becoming increasingly relevant since high-throughput sequencing studies accumulate large amounts of genomic data. Protein database annotation helps to bridge this gap; however, it is fundamental to understand the mechanisms underlying functional inheritance and divergence. If the homology relationship between proteins is known, can we determine whether the function diverged?
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