Paula Duek Roggli on Muck Rack

Paula Duek Roggli

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Articles

Protein function prediction as approximate semantic entailment - Nature Machine Intelligence

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By Maxat Kulmanov, Francisco J Guzman-Vega, Paula Duek Roggli, Lydie Lane, Stefan T. Arold
| Nature Verified
Abstract The Gene Ontology (GO) is a formal, axiomatic theory with over 100,000 axioms that describe the molecular functions, biological processes and cellular locations of proteins in three subontologies. Predicting the functions of proteins using the GO requires both learning and reasoning capabilities in order to maintain consistency and exploit the background knowledge in the GO.
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DeepGO-SE: Protein function prediction as Approximate Semantic Entailment

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By Maxat Kulmanov, Francisco J Guzman-Vega, Paula Duek Roggli, Lydie Lane
| biorxiv.org
Abstract The Gene Ontology (GO) is one of the most successful ontologies in the biological domain. GO is a formal theory with over 100,000 axioms that describe the molecular functions, biological processes, and cellular locations of proteins in three sub-ontologies. Many methods have been developed to automatically predict protein functions.
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