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A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform
Abstract Mammalian SWI/SNF chromatin remodeling complexes modulate DNA accessibility and gene expression; however, their genomic targeting mechanisms remain incompletely understood. Here, we identify SWIFT (SWI/SNF Ig-fold for transcription factor interactions), a conserved transcription factor (TF) binding platform on the SMARCD subunits.
Molecular grammars of predicted intrinsically disordered regions that span the human proteome
Keywords intrinsically disordered regions molecular grammars subcellular localization biomolecular condensates transcriptional regulation RNA polymerase cancer Introduction Eukaryotic proteomes are composed of proteins with folded domains1 and intrinsically disordered regions (IDRs).2,3,4,5,6,7,8 IDRs are implicated in a range of molecular functions and cellular processes.3,9,10,11,12,13,14 The amino acid alphabet is used in a biased manner,8,9,10 and a subset of this non-random alphabet is...
Molecular grammars of intrinsically disordered regions that span the human proteome
Abstract Intrinsically disordered regions (IDRs) of proteins are defined by functionally relevant molecular grammars. This refers to IDR-specific non-random amino acid compositions and non-random patterning of distinct pairs of amino acid types. Here, we introduce GIN (Grammars Inferred using NARDINI+) as a resource, which we have used to extract the molecular grammars of all human IDRs and classified them into thirty distinct clusters.
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