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Gene dependency-informed inference of response to targeted cancer therapies
Abstract Targeted therapies such as small-molecule inhibitors act by blocking proteins essential for cancer cell survival, yet omics-based modeling of drug sensitivity often lacks mechanistic grounding. We present FORGE (Factorization Of Response and Gene Essentiality), a joint matrix factorization framework that co-models drug response and target gene dependency to enable biologically informed stratification of treatment groups.
Optimizing genomics-aware clinical agents in precision oncology
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Abstract Agentic systems are proposed for clinical decision support, yet unrestricted tool access can undermine accountability and safety in precision oncology, where recommendations must be grounded in evolving guidelines, regulatory labels, and patient-specific molecular evidence.
By Rangan Das, K. T. Maheswari, Shaheen Siddiqui, Nikita Arora, Pavan Kumar, Tammy Shvartsman, Krishna Prasad, Vindhya Vasini Andra, Shekar Patil, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Mohammed Abdulaziz Farooq, Debarka Sengupta, Jeet Nanshi, Ankush Paul, Varun Udbalkar, Apoorva Sarvade, Harsha Chaturvedi, Shet Masih, Ravi Thippeswamy, S. S. Nirni, Brian Garsson
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Nature
Verified
scCamAge: A context-aware prediction engine for cellular age, aging-associated bioactivities, and morphometrics
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Keywords aging bioactivity neural network transfer learning anti-aging computer vision cell morphometrics image based chronological lifespan hallmarks of aging Research topic(s) CP: Cell biology Introduction As cells age, their cellular landscape undergoes dynamic changes in molecular composition, phenotypic expression, and morphological intricacies orchestrated by time.1,2,3 Various methods have been employed to pinpoint cellular age and its associated health, ranging from the traditional,...
By Vishakha Gautam, Subhadeep Duari, Saveena Solanki, Mudit Gupta, Aayushi Mittal, Sakshi Arora, Anmol Aggarwal, Anmol Sharma, Arushi Sharma, Sonam Chauhan Verified, Shiva Satija, Sanjay Kumar Mohanty, Juhi Tayal, Debarka Sengupta, Anurag Mehta, Gaurav Ahuja, Sarthak Tyagi, Rathod Kunal Pankajbhai, Suvendu Kumar, Nilesh Kumar Dixit
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Cell Reports
Verified
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