Genomic rearrangements are alterations of large genomic segments, sometimes spanning megabases. Rearrangements are composed of structural variants (SVs), of which there are several classes, including large insertions, large deletions, inversions, duplications, and translocations. Germline SVs are a significant source of variation among normal genomes [1] while somatic SVs are widely observed among many different cancers [2, 3].