Naama Barkai
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Engineering intrinsically disordered regions for guiding genome navigation
Keywords intrinsically disordered regions transcription factors synthetic biology gene regulation ChEC-seq Introduction Proteins are conventionally described as “molecular machines” that perform defined cellular functions by folding into specific structures.
Design principles of transcription factors with intrinsically disordered regions
eLife Assessment This paper presents an important theoretical exploration of how a flexible protein domain with multiple DNA binding sites may simultaneously provide stability to the DNA-bound state and enables exploration of the DNA strand. The authors propose a mechanism ("octopusing") for protein doing a random walk while bound to DNA which simultaneously enables exploration of the DNA strand and enhances the stability of the bound state.
Intrinsically disordered regions as facilitators of the transcription factor target search - Nature Reviews Genetics
Abstract Transcription factors (TFs) contribute to organismal development and function by regulating gene expression. Despite decades of research, the factors determining the specificity and speed at which eukaryotic TFs detect their target binding sites remain poorly understood. Recent studies have pointed to intrinsically disordered regions (IDRs) within TFs as key regulators of the process by which TFs find their target sites on DNA (the TF target search).
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