Jonathon Howard on Muck Rack

Jonathon Howard

As seen in: Nature, Cell Press, Pine Rivers Press, Physical Review B, HAL, JoVE- Journal of Visualized Experiments, The Border Mail, Tweed Valley Weekly
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Articles

The wavelength of the ciliary beat in Chlamydomonas saturates at long ciliary lengths

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By Jonathon Howard
| buff.ly
Significance A well-known property of ciliated cells is that short cilia tend to have wavelengths similar to their lengths, whereas long cilia support multiple wavelengths. Because these observations come from different organisms or from different cells in the same organism, the wavelength differences may be due to different genes or gene expression. Alternatively, the differences may be due to length-dependent mechanical properties that underlie motility.
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Physical bioenergetics: Energy fluxes, budgets, and constraints in cells

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By Xingbo Yang, Matthias Heinemann, Jonathon Howard, Greg Huber
| HAL
Article Dans Une Revue Proceedings of the National Academy of Sciences of the United States of America Année : 2021 Physical bioenergetics: Energy fluxes, budgets, and constraints in cells Origine Fichiers éditeurs autorisés sur une archive ouverte
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A Discard-and-Restart MD algorithm for the sampling of realistic protein transition states and enhance structure-based drug discovery

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By Alan Ianeselli, Jonathon Howard, Mark Gerstein
| biorxiv.org
Abstract We introduce a Discard and Restart molecular dynamics (MD) algorithm tailored for the sampling of realistic protein transition states. It aids computational structure based drug discovery by reducing the simulation times to compute transition pathways by up to 2000x. The algorithm iteratively performs short MD simulations and measures their proximity to a target state via a collective variable (CV) loss, which can be defined in a flexible fashion, locally or globally.
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