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Articles

Evolutionary history of Jamestown Canyon virus reveals complex multi-vector ecology

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By Ellie Bourgikos, Simon Dellicour, Philippe Lemey, Nicole Feriancek Verified, Angela B. Bransfield, Mallery I. Breban, Michael J. Misencik, Tanya A. Petruff, John Shepard, Theodore G. Andreadis, John Anderson, Kiet A. Ngo, Joseph G. Maffei, Alan P. Dupuis, Stephen M. Rich, Guang Xu, Keith Price, Madeline L. Metzger, Marc A. Suchard, rafael m lopes, Fabiana Gámbaro, Colin J. Carlson, Guy Baele, Alexander T. Ciota, Chantal B.F. Vogels, Philip M. Armstrong, Nathan D. Grubaugh, Gabrielle Sakolsky
| Cell Press Verified
Keywords Jamestown Canyon virus arbovirus phylogenetics sequencing virus evolution disease ecology mosquitoes Introduction Arthropod-borne viruses, or arboviruses, represent a diverse range of pathogens impacting the health of humans and animals.1,2,3 Many arbovirus species remain understudied due to their complex transmission cycles (e.g., a wide range of invertebrate vectors and vertebrate hosts) that present challenges to traditional epidemiological methods.4,5 Among these species, the...
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Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the US

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By rafael m lopes, Kien Pham, Fayette Klaassen, Melanie Chitwood
| Cell Reports Verified
Highlights • Combining genomic data with infection estimates shows virus lineage dynamics • ∼48% of the US population was infected with Omicron BA.1 • BA.1 and BA.5 attack rates were correlated with the social vulnerability index Summary Omicron surged as a variant of concern in late 2021. Several distinct Omicron variants appeared and overtook each other.
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Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States

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By rafael m lopes, Kien Pham, Fayette Klaassen, Melanie Chitwood
| medRxiv
NDG is a paid consultant for BioNTech. This project is supported by Cooperative Agreement NU38OT000297 from the Centers for Disease Control and Prevention (CDC) and the Council of State and Territorial Epidemiologists (CSTE), SHEPheRD Contract 200-2016-91779 from the CDC, and the CDC Broad Agency Announcement Contract 75D30122C14697. This work does not necessarily represent the views of the CDC or CSTE.
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